View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841-Insertion-3 (Length: 778)
Name: NF4841-Insertion-3
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-3 |
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| [»] chr7 (9 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 723; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 8 - 778
Target Start/End: Complemental strand, 25540116 - 25539349
Alignment:
| Q |
8 |
ataagctctcctaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctc |
107 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540116 |
ataagctctcttaacaagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctc |
25540017 |
T |
|
| Q |
108 |
tcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgctttctttgtcatgatttttgcatgttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540016 |
tcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgctttctttgtcatgatttttgcatgttc |
25539917 |
T |
|
| Q |
208 |
cattcatttcttcatgtacgtggttttttcttgttcatccatgttccttgtgaccttgttttatccacgattttttgttgttaattttcttgtttatgtt |
307 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25539916 |
cattcatttcttcatgtacgtggttttttcttgtttatccatgttccttgtgaccttgttttatccatgattttttgttgttaattttcttgtttatgtt |
25539817 |
T |
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| Q |
308 |
aaaatgtaagacacttatcacatttgcagcaaaagtaatatttcttctcaaatgaagcaactgcttcctaaacattagaacactgtgaagttttatggat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25539816 |
aaaatgtaagacacttatcacatttgcagcaaaagtaatatttcttctcaaatgaagcaactgcttcctaaacattagaacactgtgaagttttatggat |
25539717 |
T |
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| Q |
408 |
taggaattaaacacacagaaccatggtcaaaggtttctgtgtcaaccaacaattttccatcttcaagagtatgaaacaaagtcaattagagaaacatagt |
507 |
Q |
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| T |
25539716 |
taggaattaaacacacagaaccatggtcaaaggtttctgtgtcaaccaacaattctccatcttcaagagtatgaaacaaagtcaattagagaaacatagt |
25539617 |
T |
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| Q |
508 |
tgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttacttggtttacgatcaaatgtggga |
607 |
Q |
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| T |
25539616 |
tgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttacttggtttacgatcaaatgtggga |
25539517 |
T |
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| Q |
608 |
tttccaaacgagccttgaaacatttggataatggtaaacaacctaggcacaaaaaaccagttgagaattggggttttgttaaactttatgtcccaatagc |
707 |
Q |
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| T |
25539516 |
tttccaaacgagccttgaaacatttggataatggtaaacaacctaggcaca-aaaaccagttgagaattggggttttgttaaactttatttccaaatagc |
25539418 |
T |
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| Q |
708 |
ttttaccttatactttctcaaagctaaatatccgctttcattcaactttgttgcagtttttagtacatata |
778 |
Q |
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| T |
25539417 |
ttttaccttatactttctcaaagct-aatatccgc-ttcattcaactttgttgcagtttttagtacatata |
25539349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 25517537 - 25517703
Alignment:
| Q |
84 |
gtcatatcgctagtgctgttcctctcgtcgtacccctctttgctcttcaactcatgtattcatcaacattccttgtattttaggtcgatttgcttgcttt |
183 |
Q |
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|||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| |
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| T |
25517537 |
gtcatatccctagtgctgttcctctcttcatacccctctttgctcctcaactcatgtattcatcaacgttccttgtattttgggtcgatttgcctgcttt |
25517636 |
T |
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| Q |
184 |
ctttgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatg |
250 |
Q |
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| T |
25517637 |
ttatgtcatgatttttgcatgttccattcatttcttcatgtacgtggttttttcttgttcatccatg |
25517703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 279 - 352
Target Start/End: Original strand, 25517705 - 25517778
Alignment:
| Q |
279 |
tttttgttgttaatttt-cttgtttatgttaaaatgtaagacacttatcacatttgcagcaaaagtaatatttct |
352 |
Q |
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| T |
25517705 |
tttttgttgttaaatttgcttgtttatgttaaa-tgtaagacacttctcacatttgcagcaaaagtaatatttct |
25517778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 487 - 585
Target Start/End: Complemental strand, 25534207 - 25534109
Alignment:
| Q |
487 |
agtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttact |
585 |
Q |
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| T |
25534207 |
agtcaattagagaaacatagttgcatagaaaaggtacacattcagttacttggtttactttcaaatgcatcgagattcctaagaacacattcagctact |
25534109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 487 - 585
Target Start/End: Original strand, 25516206 - 25516304
Alignment:
| Q |
487 |
agtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttact |
585 |
Q |
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||||||||||| |||||| ||| |||||| ||||||||| || | ||||||| ||||| |||||||| | |||||||||||||||||| ||| |||| |
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| T |
25516206 |
agtcaattagaaaaacatgtttgcatatgaaaggtacacattcagttacttggtttactttcaaatgcatcgaggttcctaagaacacatccagctact |
25516304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 25540916 - 25540849
Alignment:
| Q |
309 |
aaatgtaagacacttatcacatttgcagcaaaagtaatatttcttctcaaatgaagcaactgcttcct |
376 |
Q |
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| T |
25540916 |
aaatgtaagactcctctcacatatgcagcaaaagtagtatttcttgtctaatgaaggaactgcttcct |
25540849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 451
Target Start/End: Complemental strand, 25526380 - 25526245
Alignment:
| Q |
313 |
gtaagacacttatcacatttgcagcaaaagtaatatttcttctcaaatgaagcaactgcttcct---aaacattagaacactgtgaagttttatggatta |
409 |
Q |
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||||||||| | ||||||||||| ||||||| |||||||||||| ||| |||||| |||| ||||||||||||| || |||||| | ||||| |
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| T |
25526380 |
gtaagacacctctcacatttgcatcaaaagt-----ttcttctcaaataaagaaactgcatccttataaacattagaacagagt-aagtttctttgatta |
25526287 |
T |
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| Q |
410 |
ggaattaaacacacagaaccatggtcaaaggtttctgtgtca |
451 |
Q |
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| T |
25526286 |
ggaataaaacgcacaaaatcagggtcaatggtttctgtgtca |
25526245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 585
Target Start/End: Complemental strand, 25526205 - 25526107
Alignment:
| Q |
487 |
agtcaattagagaaacatagttgtatatgacaggtacacaatccttaacttggtctacttccaaatgcaactaggttcctaagaacacattcagttact |
585 |
Q |
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|||||||||||||||||||| || |||||| | | ||||| || | | || || ||||| |||||||| | || ||||||||||||||||||| |||| |
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| T |
25526205 |
agtcaattagagaaacatagctgcatatgaaatgcacacattcagttagtttgtttactttcaaatgcatcgagattcctaagaacacattcagctact |
25526107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 25517465 - 25517494
Alignment:
| Q |
8 |
ataagctctcctaacaagcttatgaatttg |
37 |
Q |
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| T |
25517465 |
ataagctctcctaacaagcttatgaatttg |
25517494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 610
Target Start/End: Complemental strand, 143280 - 143218
Alignment:
| Q |
548 |
caaatgcaactaggttcctaagaacacattcagttacttggtttacgatcaaatgtgggattt |
610 |
Q |
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||||||| | ||||||||||||||||||||| ||| |||||| ||| ||||||| ||||||| |
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| T |
143280 |
caaatgcgattaggttcctaagaacacattctgttgcttggtctacattcaaatgcgggattt |
143218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 298653 - 298604
Alignment:
| Q |
559 |
aggttcctaagaacacattcagttacttggtttacgatcaaatgtgggat |
608 |
Q |
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|||||||||||||||||||||||| |||||| ||| ||||||| ||||| |
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| T |
298653 |
aggttcctaagaacacattcagttgcttggtctactttcaaatgcgggat |
298604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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