View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841-Insertion-5 (Length: 730)
Name: NF4841-Insertion-5
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 621; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 727
Target Start/End: Original strand, 6988370 - 6989085
Alignment:
| Q |
8 |
aaatcatcaagaagcgctaagaaaattacacctaaaggtagaaacctgtagtcttttactataatctctacttttcgttttactagtgtggtccacttac |
107 |
Q |
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| T |
6988370 |
aaatcatcaagaagcgctaagaaaattacacctaaaggtagaaacctgtagtcttttactataatctctacttttcgttttactagtgtggtccacttac |
6988469 |
T |
|
| Q |
108 |
attatattcaattcaatttgtacacaaaatcactattgtttaaaaataaaccattgtagtttcacgagccatggggccagctgatgaagactggttatca |
207 |
Q |
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| T |
6988470 |
attatattcaattcaatttgtacacaaaatcactattgtttaaaaataaaccattgtagtttcacgagccatggggccagctgatgaagactggttatca |
6988569 |
T |
|
| Q |
208 |
gaactctcgctttgctcatcaggtaaagttaaacactctttgttctttgttgtcaacattaatatcgggtgtatattgcacacttatatgcaacaaggaa |
307 |
Q |
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| T |
6988570 |
gaactctcgctttgctcatcaggtaaagttaaacactctttgttctttgttgtcaacattaatatcgggtgtatattgcacacttatatgcaacaaggaa |
6988669 |
T |
|
| Q |
308 |
ctgtgctttcctccataatttttaatcttttccct-nnnnnnnctataacttttaaatcagaacggctatcagcggcgttgttctaatgttgtgaaataa |
406 |
Q |
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| T |
6988670 |
ctgtgctttcctccataatttttaatcttttccctaaaaaaaactataacttttaaatcagaacggctatcagcggcgttgttctaatgttgtgaaataa |
6988769 |
T |
|
| Q |
407 |
cataccaacagttgccaagttatacctcaatttaatatcaatgcgtagaagttgctaagttacacctcaatttaatatcaatgcgtaaaacacatgttgg |
506 |
Q |
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| T |
6988770 |
cataccaacagttgccaagttatacctcaatttaatatcaatgcgtagaagttgctaagttacacctcaatttaatatcaatgtgtaaaacacatgttgg |
6988869 |
T |
|
| Q |
507 |
tcgttatgtagattaagtataacttcnnnnnnnnnnccattttgaaatgcgtaaaagtgaatgactcagttttcctctgtctgaattataattatagaat |
606 |
Q |
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| T |
6988870 |
tcgttatgcagattaagtataacttc--ttttttttccattttgaaatgcgtaaaagtgaatgactcagttttcctctgtctgaattataattatagaat |
6988967 |
T |
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| Q |
607 |
tgatcttattaaagataatttggtgaatgcactaatgtaatgtgcatgatgcaggttgagagatttgcctgcctttatacaaagccggggtatctaaact |
706 |
Q |
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| T |
6988968 |
tgatcttattaaagataatttggttaatgcactaatgtaatgtgcatgatgcaggttgagagatttgcctgcctttatac-aagcc-gggtatct-aact |
6989064 |
T |
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| Q |
707 |
tgggtctgttatcttcagaca |
727 |
Q |
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| T |
6989065 |
tgggtctgttatcttcagaca |
6989085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 35481690 - 35481606
Alignment:
| Q |
150 |
aaaataaaccattgtagtttcacgagccatggggccagctgatgaagactggttatcagaactctcgctttgctcatcaggtaaa |
234 |
Q |
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| T |
35481690 |
aaaataaaccattgcagtttcacgagacatggggacaactgatgaagaccggttatcagaactcgcgctttgctcatcaggtaaa |
35481606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 650 - 688
Target Start/End: Complemental strand, 35481379 - 35481341
Alignment:
| Q |
650 |
gcatgatgcaggttgagagatttgcctgcctttatacaa |
688 |
Q |
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| T |
35481379 |
gcatgatgcaggttaagagatttgcctgcctttatacaa |
35481341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 165 - 234
Target Start/End: Original strand, 52360019 - 52360088
Alignment:
| Q |
165 |
agtttcacgagccatggggccagctgatgaagactggttatcagaactctcgctttgctcatcaggtaaa |
234 |
Q |
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| T |
52360019 |
agtttcacgaaccatggggacagcttatgaaaaccggttatcagaattctcgctttgctcatcaggtaaa |
52360088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 653 - 686
Target Start/End: Original strand, 52360418 - 52360451
Alignment:
| Q |
653 |
tgatgcaggttgagagatttgcctgcctttatac |
686 |
Q |
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| T |
52360418 |
tgatgcaggttgagaggtttgcctgcctttatac |
52360451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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