View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4841-Insertion-7 (Length: 687)

Name: NF4841-Insertion-7
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4841-Insertion-7
NF4841-Insertion-7
[»] chr1 (1 HSPs)
chr1 (6-683)||(3148768-3149445)


Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 6 - 683
Target Start/End: Original strand, 3148768 - 3149445
Alignment:
Q  6 cagttgttgccgtctcggtcgaggagaatatttgacaagttatggaatgttggtagtaaaggacatggagagaataggagttcagagacttcagggagtt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3148768 cagttgttgccgtctcggtcgaggagaatatttgacaagttatggaatgttggtagtaaaggacatggagagaataggagttcagagacttcagggagtt 3148867  T
Q  106 ctaatagtccaacttctgtagtccttggagatacaaaatcttctggttcatccttaagacacaaaagacattctatctcttagggaattacatagaatta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3148868 ctaatagtccaacttctgtagtccttggagatacaaaatcttctggttcatccttaagacacaaaagacattctatctcttagggaattacatagaatta 3148967  T
Q  206 attggaacaagtgaaaagaatgttcaaattgatgtgaagtgtaaagtggtaggttgctaatcttgtgtctgcagtgcatgcaagtaatgtaatttgaatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3148968 attggaacaagtgaaaagaatgttcaaattgatgtgaagtgtaaagtggtaggttgctaatcttgtgtctgcagtgcatgcaagtaatgtaatttgaatt 3149067  T
Q  306 aagatctcagtagcattggnnnnnnnngacatggagtataacatttttgctgtgttttctgtatcttgtttctttctgtctagtagggtaagatctttca 405  Q
    |||||||||| ||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3149068 aagatctcagcagcattggaaaaaaaagacatggagtataacatttttgctgtgttttctgtatcttgtttctttctgtctagtagggtaagatctttca 3149167  T
Q  406 tgcttactgatctggaaatgggtagggttcttaagattttattaaatgctgctgccgtttgtatattatcgttttaacttattaaatcagtgcatggctt 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3149168 tgcttactgatctggaaatgggtagggttcttaagattttattaaatgctgctgccgtttgtatattatcgttttaacttattaaatcagtgcatggctt 3149267  T
Q  506 ctgacttagcttggatttaaatcaagaccaagaaatttaaagctttcagttctactagatgtgcatagaaccatactcttacatttactaatgatttgtc 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3149268 ctgacttagcttggatttaaatcaagaccaagaaatttaaagctttcagttctactagatgtgcatagaaccatactcttacatgtactaatgatttgtc 3149367  T
Q  606 tgtcttcttgtttgattgatcttaaggagaaattgcactaacctaggagaaattgtctaaatgactcggacttctatt 683  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||    
T  3149368 tgtcttcttgtttgattgatcttaaggagaaattgcactaacctaggagaaattgtctaaaagaatcgaacttctatt 3149445  T

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