View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4841-Insertion-8 (Length: 567)
Name: NF4841-Insertion-8
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-8 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Original strand, 20955842 - 20956405
Alignment:
| Q |
8 |
aaaaagagtagaagaggagatact---gatggtggatgaagggacaagggtggtggtaatgaaggtcatatgaatcttggtaatggctccagcaaaaaac |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
20955842 |
aaaaagagtagaagaggagatactactgatggtgattgaagggacaagggtggtggtaatgaaggtcatatgaatcttggcaatggctccggcaaaaaac |
20955941 |
T |
|
| Q |
105 |
tgaagtcgaggaggaacaataaaaaggagaaaataataagagccattttcataatttggacagtgttgctacattcttaaacctttgctgcaaataaatt |
204 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20955942 |
tgaagtcgaggaggaacaataaaaaagagaaaataataagagccattttcataatttggacagtgtcgctacattcttaaacctttgctgcaaataaatt |
20956041 |
T |
|
| Q |
205 |
ctctagaaaatagaatacgccatgtgatctcatacaccttatgcaggtgcctgcggtacggatagaattcaacaagnnnnnnnnn-gtctagcatctagt |
303 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20956042 |
ctctagaaaatagaatatgccatgtgatctcatacaccttatgcaggtgcctgcggtacggatagaattcaacaagaaaaaaaaaagtctagcatctagt |
20956141 |
T |
|
| Q |
304 |
accgaccgaagtagcttattgactgccacttgaaacatttagttaggattgtttttcattatgtttattagatagatcctaaacaaacaaacgcagaatt |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
20956142 |
accgaccgaagtagcttattgactgccacttgaaacatttagttaggattgtttttcattatgtttattagatagatcctaaacaaac--acacagaatt |
20956239 |
T |
|
| Q |
404 |
tataaatgtttctgctagtgatacgttcatgtcccacaactattctttatatctaacacattcaaatataatcagaaac--aatgaggtgccgttaatac |
501 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
20956240 |
tataaatatttctgctagtgatacattcatgtctcacaactatactttatatctaacacattcaaatataatcagaaacaaaatgaggtgccgttaatac |
20956339 |
T |
|
| Q |
502 |
aatcttattgttgctatatattatacattaagaaacatatctatcaacagctgtagcagatcttta |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20956340 |
aatcttattgttgctatatattatacattaagaaacatatctatcaacagctgtagcagatcttta |
20956405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University