View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841-Insertion-9 (Length: 540)
Name: NF4841-Insertion-9
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841-Insertion-9 |
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| [»] chr6 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 257 - 540
Target Start/End: Complemental strand, 11228568 - 11228285
Alignment:
| Q |
257 |
tccactcaacaggacccacacctggaggtggtggcttagcaagtatttcttctttagttttcttggggtagaagtatgcattccttaagctatatttata |
356 |
Q |
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| T |
11228568 |
tccactcaacaggacccacacctggaggtggtggcttagcaagtatttcttctttagttttcttggggtagaagtatgtattccttaagctatatttata |
11228469 |
T |
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| Q |
357 |
ggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattt |
456 |
Q |
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| T |
11228468 |
ggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgtatttaaaggtcaatattt |
11228369 |
T |
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| Q |
457 |
tgatataaaaggcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatacta |
540 |
Q |
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| T |
11228368 |
tgatataaaaggcacatcaacaaacaaacaaaaattaacaaagtcaaaataataacctcgatacactgccattgatctatacta |
11228285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 11224674 - 11224422
Alignment:
| Q |
6 |
cagcatgtgggagtttaagcttcttacgattttcggtattcttctcactttgtttctacaattttaaactatgatagttaatacttgtatgacaaagttt |
105 |
Q |
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| T |
11224674 |
cagcatgtgggactttaagcttcttacgattttcggtattcttctcactttgtttcaacaattttaaactatgatagtta----ttgtatgacatagttt |
11224579 |
T |
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| Q |
106 |
tttagaatatgagattgtgtaaataaatattctcggtgtcaaagacatattataaggacattttagtatctttatagattctaagagaatgcttgtaaaa |
205 |
Q |
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| T |
11224578 |
tttagaatatgagattgtgtaaataaatattctcggtgtcaaagacatattataaggacattttagtatctttatagattctaagagaatgcttgtaaaa |
11224479 |
T |
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| Q |
206 |
taaatttatataccttcattttgtcacctttatagtgatgcacaaaagcagtccact |
262 |
Q |
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| T |
11224478 |
taaatttctataccttcattttgtcacctttatagtgatgcacaaaagtagtccact |
11224422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 340 - 540
Target Start/End: Complemental strand, 13552007 - 13551808
Alignment:
| Q |
340 |
cttaagctatatttataggatctccatctatcccctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctaaaaatgta |
439 |
Q |
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| T |
13552007 |
cttaagctatatttataggatctccatctatccgctagtgtactcctcacccatttgattccagcagcatagtcaaactcaaaatgtttctagaaatgta |
13551908 |
T |
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| Q |
440 |
tttaaaggtcaatattttgatataaaaggcacatcaacaaacnnnnnnnnnttaacaaagtcaaaataataacctcaatacactgccattgatctatact |
539 |
Q |
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| T |
13551907 |
tttaaaggtcaatattttgatataaaaagcgcatcaacaaac-aaaaaaaattaacaaagtcaaaatataaacctcaatacactgccattgatctatact |
13551809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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