View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841_low_1 (Length: 430)
Name: NF4841_low_1
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 412
Target Start/End: Complemental strand, 31901110 - 31900723
Alignment:
| Q |
23 |
acattgctacaaagacttttggtataaagagtcgatcgaatcaccgactctcataccattatttggtcataaggaagtttcaaaatcactacattaagtt |
122 |
Q |
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| T |
31901110 |
acattgctacaaagacttttggtataaagagtcgatcgaatcatcgactctcataccattatttgatcataaggaagtttcaaaatcactacattaagtt |
31901011 |
T |
|
| Q |
123 |
aagaattacaacacagttttattagacatcatatcttaactcaaattgtttaacacaatttacgaatcgttttatttatatgttgcttaactatatgtta |
222 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||| |||||||| |
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| T |
31901010 |
aagaattacaacacagttttattggacatcatatcttaactaaaattgttta--acaatttacgagtcattttatttatatgttgcttaacaatatgtta |
31900913 |
T |
|
| Q |
223 |
tttcatttattgtgaaattgtcaaatgaataaacaactatgcattctctgnnnnnnnnntccttttcatgtctttaaaatttcaactttaataaaaatct |
322 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31900912 |
tttcatttattgtgaaattctcaaatgaataaacaactatggattctct-aaaaaaaattccttttcatgtctttaaaatttcaactttaataaaaatct |
31900814 |
T |
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| Q |
323 |
taatttttac-ttgaaaactcttcatagatttttcctnnnnnnnnctctatagattttaaatttttgtactttttcttagctgttctgttc |
412 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||| |
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| T |
31900813 |
taatttttacattgaaaactcttcatagatttttcctaaaaaaaactctatagattttaaattattgcactttttgttagctgttctgttc |
31900723 |
T |
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