View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4841_low_3 (Length: 262)
Name: NF4841_low_3
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4841_low_3 |
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| [»] scaffold0576 (1 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: scaffold0576 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 1909 - 1670
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccaacactgaaaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1909 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccgacactgaaaa |
1810 |
T |
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| Q |
122 |
gctgattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
221 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1809 |
gctgattgagaaatc-aaaataaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
1711 |
T |
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| Q |
222 |
gagttcaacgagggagagggagacagagagcgttcaaatga |
262 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| |
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| T |
1710 |
gagttcaacgagggagagagagagagagagcgttcaaatga |
1670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 15356919 - 15356680
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccaacactgaaaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15356919 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccgacactgaaaa |
15356820 |
T |
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| Q |
122 |
gctgattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
221 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15356819 |
gctgattgagaaatc-aaaataaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
15356721 |
T |
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| Q |
222 |
gagttcaacgagggagagggagacagagagcgttcaaatga |
262 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| |
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| T |
15356720 |
gagttcaacgagggagagagagagagagagcgttcaaatga |
15356680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 28705310 - 28705375
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaa |
87 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
28705310 |
ctaaccaaattacatcacactaatatacaaaaatatatcataaaattgaaaacaatttcttaaaaa |
28705375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 26908180 - 26908245
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaa |
87 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |||| |||| |
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| T |
26908180 |
ctaaccaaattacatcacactaatatacaaaaatatatcataaaattgaaaataatatcttaaaaa |
26908245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 3731466 - 3731227
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccaacactgaaaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
3731466 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaaaaaactactatcagtgcaccaccgacactgaaaa |
3731367 |
T |
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| Q |
122 |
gctgattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
221 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731366 |
gctgattgagaaatcaaaat-aaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
3731268 |
T |
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| Q |
222 |
gagttcaacgagggagagggagacagagagcgttcaaatga |
262 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| |
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| T |
3731267 |
gagttcaacgagggagagagagagagagagcgttcaaatga |
3731227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 20261855 - 20261626
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccaacactgaaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
20261855 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaaaaaactactatcagtgcaccaccgaaactgaaaa |
20261756 |
T |
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| Q |
122 |
gctgattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
221 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20261755 |
gcagattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
20261656 |
T |
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| Q |
222 |
gagttcaacgagggagagggagacagagag |
251 |
Q |
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|||||||||||||||||| |||| |||||| |
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| T |
20261655 |
gagttcaacgagggagagagagagagagag |
20261626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 251
Target Start/End: Complemental strand, 28655686 - 28655457
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccaacactgaaaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| |
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| T |
28655686 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaaaaaactactatcagtgcaccaccgaaactgaaaa |
28655587 |
T |
|
| Q |
122 |
gctgattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
221 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28655586 |
gcaaattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
28655487 |
T |
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| Q |
222 |
gagttcaacgagggagagggagacagagag |
251 |
Q |
| |
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|||||||||||||||||| |||| |||||| |
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| T |
28655486 |
gagttcaacgagggagagagagagagagag |
28655457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 262
Target Start/End: Original strand, 2754628 - 2754868
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccaacactgaaaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2754628 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaacaaactactatcagtgcaccaccgacactgaaaa |
2754727 |
T |
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| Q |
122 |
gctgattgagaaatcaaaaacaaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagatggggggtttcaatcaattgattcaatta |
221 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2754728 |
gctgattgagaaatc-aaaataaaaagaaactaatacttaccaaattagggttcaattgatttctgaaagat-gggggtttcaatcaattgattcaatta |
2754825 |
T |
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| Q |
222 |
gagttcaacgagg--gagagggagacagagagcgttcaaatga |
262 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||||||||||| |
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|
| T |
2754826 |
gagttcaacgagggagagagagagagagagagcgttcaaatga |
2754868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 23067563 - 23067628
Alignment:
| Q |
22 |
ctaatcaaattacatcacactaatatacataaatatatcataaaattgaaaacaatttctttaaaa |
87 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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|
| T |
23067563 |
ctaaccaaattacatcacactaatatacaaaaatatatcataaaattgaaaacaatttcttaaaaa |
23067628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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