View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4841_low_4 (Length: 253)

Name: NF4841_low_4
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4841_low_4
NF4841_low_4
[»] chr7 (2 HSPs)
chr7 (18-253)||(44501410-44501645)
chr7 (134-222)||(32413624-32413712)
[»] chr3 (7 HSPs)
chr3 (111-232)||(45870472-45870593)
chr3 (113-215)||(45856889-45856991)
chr3 (129-230)||(20995053-20995154)
chr3 (167-222)||(25601740-25601795)
chr3 (132-190)||(778229-778287)
chr3 (129-230)||(20981894-20981995)
chr3 (134-215)||(25596902-25596983)
[»] chr4 (1 HSPs)
chr4 (111-223)||(3978077-3978189)
[»] chr6 (7 HSPs)
chr6 (113-223)||(33844279-33844389)
chr6 (165-222)||(33840288-33840345)
chr6 (134-222)||(7115536-7115624)
chr6 (134-222)||(7120608-7120696)
chr6 (134-222)||(7124012-7124100)
chr6 (134-190)||(7140758-7140814)
chr6 (134-190)||(8680372-8680428)
[»] chr5 (3 HSPs)
chr5 (125-215)||(7894982-7895071)
chr5 (111-232)||(38142126-38142247)
chr5 (111-163)||(7976853-7976905)
[»] chr2 (1 HSPs)
chr2 (135-223)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 44501645 - 44501410
Alignment:
Q  18 attaggttcttatcagaatgtcaagtgagataataattcgaccgacaaagaagaaattaaaactcactgagagtgtaagtaaagactgacttggcgactt 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44501645 attaggtacttatcagaatgtcaagtgagataataattcgaccgacaaagaagaaattaaaactcactgagagtgtaagtaaagaccgacttggcgactt 44501546  T
Q  118 acctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501545 acctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgt 44501446  T
Q  218 cttcctgcacttatagcattcttcagattttcacac 253  Q
    ||||||||||||||||||||||||||||||||||||    
T  44501445 cttcctgcacttatagcattcttcagattttcacac 44501410  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 32413624 - 32413712
Alignment:
Q  134 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 222  Q
    ||||||||||| || | ||||||  ||||| |||| ||||| ||||||||||||||| | ||||||||| |||| ||||| ||||||||    
T  32413624 cttcacatactctcctctttgaacaccaaacacgccgttcaaacttgcattttgtccacaagatggaagaatctctggaagcgtcttcc 32413712  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 45870593 - 45870472
Alignment:
Q  111 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 210  Q
    ||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| |||| ||||| |||||| |||| || || ||||  | |||||||||    
T  45870593 gcgacctacctgactgtgttatccttcacatactgtcgttttcgaatgccaaagacgcagttcaaacttgcgttttatcaccaagatatacggatctttg 45870494  T
Q  211 gaaacgtcttcctgcacttata 232  Q
    ||||||||||||| | ||||||    
T  45870493 gaaacgtcttccttctcttata 45870472  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 45856991 - 45856889
Alignment:
Q  113 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 212  Q
    ||||||| |||||  |||||||| ||||||||||||||| |||| || ||| |||| |||   ||||||||||||||||| ||||  |||||||| ||||    
T  45856991 gacttacatgactatattatcctccacatactgtcttttctgaacgctaaagacgcggttggaacttgcattttgtccccaagatacaaggatctctgga 45856892  T
Q  213 aac 215  Q
    |||    
T  45856891 aac 45856889  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 20995154 - 20995053
Alignment:
Q  129 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 228  Q
    ||||||||||||| || || ||| ||||  ||||| |||||||||| |||||  |||| ||||| | ||  |||||||||||||||||||||||||| ||    
T  20995154 ttatccttcacattctctcctttctgaacaccaaagacgctgttcaaacttgtgttttatccccaatatataaggatctttggaaacgtcttcctgctct 20995055  T
Q  229 ta 230  Q
    ||    
T  20995054 ta 20995053  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 25601740 - 25601795
Alignment:
Q  167 gctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 222  Q
    |||||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||    
T  25601740 gctgttcaaacttgcattttgtccacaagatggaagtatctttggaaacgtattcc 25601795  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 190
Target Start/End: Complemental strand, 778287 - 778229
Alignment:
Q  132 tccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 190  Q
    ||||||||||||| ||||||||||| |||||| | || || || |||||||||||||||    
T  778287 tccttcacatactatcttttttgaaagccaaagaggcagtccaaacttgcattttgtcc 778229  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 20981995 - 20981894
Alignment:
Q  129 ttatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcctgcact 228  Q
    ||||||||||||| || || ||| ||||  ||||| | |||||||| |||||  |||| ||||| | ||  || ||||||||||||||||||||||| ||    
T  20981995 ttatccttcacattctctcctttctgaacaccaaacatgctgttcaaacttgtgttttatccccaatatataaagatctttggaaacgtcttcctgctct 20981896  T
Q  229 ta 230  Q
    ||    
T  20981895 ta 20981894  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 25596902 - 25596983
Alignment:
Q  134 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaac 215  Q
    ||||||||  |||| ||||||||| ||||  | || ||||| ||||||||||||||  | ||||||||| ||||||||||||    
T  25596902 cttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtctacgagatggaagaatctttggaaac 25596983  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 223
Target Start/End: Original strand, 3978077 - 3978189
Alignment:
Q  111 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 210  Q
    |||||||||||||  ||||||| ||||||||||| || ||||| ||  ||||  |||| ||||| |||||| |||| ||| | ||||  |||||||||||    
T  3978077 gcgacttacctgaaagcattattcttcacatactctcgtttttaaacaccaaccacgcggttcaaacttgcgttttatccacaagatataaggatctttg 3978176  T
Q  211 gaaacgtcttcct 223  Q
    |||||||||||||    
T  3978177 gaaacgtcttcct 3978189  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 33844389 - 33844279
Alignment:
Q  113 gacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttgga 212  Q
    |||||||| ||||||||| |  || ||||  |||| ||||||||  || ||||||| ||||| ||||||||||||||| ||||||||||  |||| ||||    
T  33844389 gacttacccgactgcattcttatttacattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccagatggaaacatctctgga 33844290  T
Q  213 aacgtcttcct 223  Q
    ||||| |||||    
T  33844289 aacgtattcct 33844279  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 33840345 - 33840288
Alignment:
Q  165 acgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 222  Q
    |||||||||  ||||||||||||||| ||||||||||  |||||||||||||| ||||    
T  33840345 acgctgttcgaacttgcattttgtccaccagatggaaacatctttggaaacgtattcc 33840288  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 7115624 - 7115536
Alignment:
Q  134 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 222  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7115624 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7115536  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 7120696 - 7120608
Alignment:
Q  134 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 222  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7120696 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7120608  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 222
Target Start/End: Complemental strand, 7124100 - 7124012
Alignment:
Q  134 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcc 222  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||  ||||||||   ||||||||| |||| |||||  |||||||    
T  7124100 cttcacatactctcttttttgaacaccaaatacgcagttcaaacttgtgttttgtccaaaagatggaagaatctctggaagtgtcttcc 7124012  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 7140814 - 7140758
Alignment:
Q  134 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 190  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  7140814 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 7140758  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 8680428 - 8680372
Alignment:
Q  134 cttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcc 190  Q
    ||||||||||| |||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  8680428 cttcacatactctcttttttgaatactaaatacgcagttcaaacttgtattttgtcc 8680372  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 7894982 - 7895071
Alignment:
Q  125 tgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaac 215  Q
    ||||||||||||||||| || || ||||||||||||||| | || ||||| ||||||||||||||   |||||||||| |||| |||||||    
T  7894982 tgcattatccttcacattctttcctttttgaatgccaaacaagccgttca-acttgcattttgtctatcagatggaagaatctctggaaac 7895071  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 38142247 - 38142126
Alignment:
Q  111 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttg 210  Q
    ||||||||||||||||  |||||||||||||||| || |||||||| || ||| | || |||   ||||  ||| |||||   ||||||| |||||| ||    
T  38142247 gcgacttacctgactgtgttatccttcacatactctcctttttgaacgctaaacaggcagttacaacttcaattctgtccttaagatggagggatctatg 38142148  T
Q  211 gaaacgtcttcctgcacttata 232  Q
    ||||| ||||||||| ||||||    
T  38142147 gaaacttcttcctgctcttata 38142126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 7976905 - 7976853
Alignment:
Q  111 gcgacttacctgactgcattatccttcacatactgtcttttttgaatgccaaa 163  Q
    |||||||||| || ||||||||||||||||| || || |||||||| ||||||    
T  7976905 gcgacttacccgaatgcattatccttcacattctctcctttttgaacgccaaa 7976853  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 43864136 - 43864048
Alignment:
Q  135 ttcacatactgtcttttttgaatgccaaaaacgctgttcagacttgcattttgtcccccagatggaaggatctttggaaacgtcttcct 223  Q
    ||||||||||||| ||||||||||| ||||| || ||||| |||||||||||||||   |||||||   ||||||||||  ||||||||    
T  43864136 ttcacatactgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagatggatcaatctttggaagagtcttcct 43864048  T

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