View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4841_low_5 (Length: 252)

Name: NF4841_low_5
Description: NF4841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4841_low_5
NF4841_low_5
[»] chr8 (3 HSPs)
chr8 (52-174)||(3730642-3730764)
chr8 (172-252)||(3731159-3731239)
chr8 (51-113)||(28156891-28156953)
[»] chr7 (3 HSPs)
chr7 (52-174)||(2755331-2755453)
chr7 (172-252)||(2754856-2754936)
chr7 (52-112)||(23068778-23068839)
[»] scaffold0576 (2 HSPs)
scaffold0576 (53-174)||(1086-1207)
scaffold0576 (172-252)||(1602-1682)
[»] chr6 (4 HSPs)
chr6 (53-174)||(15356096-15356217)
chr6 (172-252)||(15356612-15356692)
chr6 (52-113)||(13070205-13070266)
chr6 (53-112)||(26909625-26909684)
[»] chr1 (3 HSPs)
chr1 (47-174)||(20261024-20261151)
chr1 (172-252)||(20261543-20261623)
chr1 (52-102)||(10979575-10979625)
[»] chr2 (3 HSPs)
chr2 (52-174)||(28654848-28654970)
chr2 (172-252)||(28655362-28655442)
chr2 (52-112)||(25808576-25808636)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-51)||(480848-480880)
[»] chr5 (1 HSPs)
chr5 (52-112)||(20745868-20745928)
[»] scaffold0011 (1 HSPs)
scaffold0011 (54-112)||(135223-135281)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 3730642 - 3730764
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 151  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3730642 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 3730741  T
Q  152 gcgggcgctaatataggttgaca 174  Q
    |||||||||||||||||||||||    
T  3730742 gcgggcgctaatataggttgaca 3730764  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 3731159 - 3731239
Alignment:
Q  172 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3731159 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgct 3731239  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 28156891 - 28156953
Alignment:
Q  51 gcactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctat 113  Q
    ||||||| |||||||||| |||| |||||||  ||||||||||||||||| ||||| ||||||    
T  28156891 gcactacgccaattttgagatttagtagcgctaatttaatagcacttttagagaaaatgctat 28156953  T

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Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 2755453 - 2755331
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 151  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2755453 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 2755354  T
Q  152 gcgggcgctaatataggttgaca 174  Q
    |||||||||||||||||||||||    
T  2755353 gcgggcgctaatataggttgaca 2755331  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 2754936 - 2754856
Alignment:
Q  172 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2754936 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgct 2754856  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 23068839 - 23068778
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcactttta-aagaaagtgcta 112  Q
    |||||| ||||||||||||||| ||| |||| ||||||||||||||||| || |||||||||    
T  23068839 cactacgccaattttgacatttagtaacgcccatttaatagcacttttagaaaaaagtgcta 23068778  T

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Target: scaffold0576 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 1086 - 1207
Alignment:
Q  53 actacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 152  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1086 actacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 1185  T
Q  153 cgggcgctaatataggttgaca 174  Q
    ||||||||||||||||||||||    
T  1186 cgggcgctaatataggttgaca 1207  T

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Target: scaffold0576; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 1602 - 1682
Alignment:
Q  172 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1602 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgct 1682  T

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Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 15356096 - 15356217
Alignment:
Q  53 actacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 152  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15356096 actacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggcg 15356195  T
Q  153 cgggcgctaatataggttgaca 174  Q
    ||||||||||||||||||||||    
T  15356196 cgggcgctaatataggttgaca 15356217  T

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Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 15356612 - 15356692
Alignment:
Q  172 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  15356612 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatccctcacctaacccatcatttgaacgct 15356692  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 13070266 - 13070205
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctat 113  Q
    |||||| |||||||||| |||| |||||||  ||||||||||||||||| ||||| ||||||    
T  13070266 cactacgccaattttgaaatttagtagcgctaatttaatagcacttttagagaaaatgctat 13070205  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 26909684 - 26909625
Alignment:
Q  53 actacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 112  Q
    ||||| ||||||||||||||| |||||||  | ||||||||||||||| | |||||||||    
T  26909684 actacgccaattttgacatttagtagcgctcagttaatagcacttttagaaaaagtgcta 26909625  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 47 - 174
Target Start/End: Original strand, 20261024 - 20261151
Alignment:
Q  47 agatgcactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagt 146  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  20261024 agattcactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagttgactctcgtacaaataatagcagt 20261123  T
Q  147 ttggcgcgggcgctaatataggttgaca 174  Q
    ||||||||||||||||||||||||||||    
T  20261124 ttggcgcgggcgctaatataggttgaca 20261151  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 20261543 - 20261623
Alignment:
Q  172 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  20261543 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatctctcacctaacccatcatttgaacgct 20261623  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 10979575 - 10979625
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaa 102  Q
    |||||| |||||||| ||||||  ||||||||||||||||||| |||||||    
T  10979575 cactacgccaattttaacatttattagcgcctatttaatagcatttttaaa 10979625  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 28654848 - 28654970
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgctatctaagagataactctcgtacaaataatagcagtttggc 151  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  28654848 cactacaccaattttgacatttagtagcgcctatttaatagcacttttaaagaaagtgctatctaagagttgactctcgtacaaataatagcagtttggc 28654947  T
Q  152 gcgggcgctaatataggttgaca 174  Q
    |||||||||||||||||||||||    
T  28654948 gcgggcgctaatataggttgaca 28654970  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 172 - 252
Target Start/End: Original strand, 28655362 - 28655442
Alignment:
Q  172 acaaatgccgaactctctccctagtccctaacctcataccttcgtcgatctatccctcacctaacccatcatttgaacgct 252  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  28655362 acaaatgccgaactctctccctagtccctaacctcataccttcatcgatctatctctcacctaacccatcatttgaacgct 28655442  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 25808576 - 25808636
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 112  Q
    |||||| ||||||||||||||| |||||||| |||||||| |||||||| | |||||||||    
T  25808576 cactacgccaattttgacatttagtagcgcccatttaataacacttttagaaaaagtgcta 25808636  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 480848 - 480880
Alignment:
Q  19 acactataatatgctggagtgttttgttagatg 51  Q
    |||||||||||||||||||||||||||||||||    
T  480848 acactataatatgctggagtgttttgttagatg 480880  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 20745868 - 20745928
Alignment:
Q  52 cactacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 112  Q
    |||||| ||||||||||||||| ||||| |  ||||||||||||||||| | |||||||||    
T  20745868 cactacgccaattttgacatttagtagcactcatttaatagcacttttagaaaaagtgcta 20745928  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 135223 - 135281
Alignment:
Q  54 ctacaccaattttgacatttggtagcgcctatttaatagcacttttaaagaaagtgcta 112  Q
    |||| |||||||| ||||||  ||||||| ||||||||||||||||| | |||||||||    
T  135223 ctacgccaattttaacatttaatagcgcccatttaatagcacttttagaaaaagtgcta 135281  T

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