View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842-Insertion-10 (Length: 283)
Name: NF4842-Insertion-10
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842-Insertion-10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 44708966 - 44709241
Alignment:
| Q |
8 |
acataagcatataataagtttagccccctaaaaaccaaccggcaaacacatacaaaactcaaatctcttatcggttggaccaattcatttttagtttctt |
107 |
Q |
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| T |
44708966 |
acataagcatataataagtttagccccctaaaaaccaaccggcaaacacatacaaaactcaaatcttttatcggttggaccaatccatttttagtttctt |
44709065 |
T |
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| Q |
108 |
atacaattcnnnnnnnncactcattgatgaaatactaatggttacacttgcatcgaattttattaattgaaatattatctaacccttatatttgtacttc |
207 |
Q |
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| T |
44709066 |
atacaattctttttttttactcattgatgaaatactaatggttacacttgcatcgaattttattaattgaaatattatccaacccttatatttgtacttc |
44709165 |
T |
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| Q |
208 |
tttaattctcctgcatccattcaacatttcattgttttttctatctatcttgtcttatcatattatttatctatca |
283 |
Q |
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| T |
44709166 |
tttaattctcctgcatccattcaacatttcattgttttttctatctatcttatcttatcatattatttatctatca |
44709241 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 41966692 - 41966728
Alignment:
| Q |
222 |
atccattcaacatttcattgttttttctatctatctt |
258 |
Q |
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| T |
41966692 |
atccattcaacatttcatttttttttctctctatctt |
41966728 |
T |
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