View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842-Insertion-12 (Length: 863)
Name: NF4842-Insertion-12
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842-Insertion-12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 495 - 862
Target Start/End: Original strand, 19754233 - 19754600
Alignment:
| Q |
495 |
tatcaaaaacggataaaaccgttaaaattcagaacactatagttgaagagaacgacttaaaaattcagaggaaagcaataaactgaagtttctaaatatt |
594 |
Q |
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| T |
19754233 |
tatcaaaaacggataaaaccgttaaaattcaaaacactatagttgaagagaatggcttaaaaattcagaggaaagcaataaactgaagtttctaaatatt |
19754332 |
T |
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| Q |
595 |
tcaaagtacatatgatactaaatcttaaactcatttttgagcttgttgagattagtcttcgaatgagccaatttagcatcaagaaggtctccttcggttt |
694 |
Q |
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| T |
19754333 |
tcaaagtacatatggtactaaatcttaaactcagttttgagcttgttgagattagtcttcgaatgagccaatttagcatcaagaaggtctccttcagttt |
19754432 |
T |
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| Q |
695 |
ttagttttgctatttcagcatttttccgctttgaaatttcgaccttcctgatggtaagatttgcttcctttttaagccgttcatctttttccaaaaggga |
794 |
Q |
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| T |
19754433 |
ttagttttgctatttcagcatttttccgctttgaatcttcgaccttcctgatggtaagatttgcttcctttttaagccgttcatctttttccaaaaggga |
19754532 |
T |
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| Q |
795 |
tttcttgttcgacttcaattcttgaattgccttttcatattcggaaatggcaaggtcgtactcctcca |
862 |
Q |
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| T |
19754533 |
tttcttgttcgacttcaattcttgaattgccttttcatattcggaaatggcaaggtcgtactcctcca |
19754600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 190 - 503
Target Start/End: Original strand, 19752581 - 19752911
Alignment:
| Q |
190 |
tggtttatataacgtaagagggaggaaggagtaatgattatcaacctttcagttttccctgtgaatattgaggatgtgaggatgtgagaaaaagggtcag |
289 |
Q |
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| T |
19752581 |
tggtttatatagcgtaagagggaggaaggagtaatgattatcaacctttcagttttccctgtgaatgtaagccacatgttcacttctgaaa--gggtcag |
19752678 |
T |
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| Q |
290 |
tttattgaggatgtgagaagttaaaaagtttaa-------------------aatttatgatatttatttatttcaaggaacttttcagttcccaattta |
370 |
Q |
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| T |
19752679 |
tttattgaggaggttagaagttaaaaattttaatattagaagttatggatttaatttatgatatttatttatttcaaggaacttttcaattcccaattta |
19752778 |
T |
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| Q |
371 |
gtttccagtgttttgactagagagacttttcagtttcttctaatttcaatttgttgctgagttatagcttaaaaggttgagtttgattgattcatattcg |
470 |
Q |
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| T |
19752779 |
gtttccagtgttttgtctagagagacttttcagcttcttctaatttcaatttgttgctgagttatagcttaaaaggttgagtttgattgattcatattcg |
19752878 |
T |
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| Q |
471 |
acagagtttaaataagcaatatcatatcaaaaa |
503 |
Q |
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| T |
19752879 |
acagagtttaaataagcaatagcatatcaaaaa |
19752911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 16602002 - 16602086
Alignment:
| Q |
10 |
ttggaggtttgcatcaaactcaaaagatgttaaattccatgcgcaacaactttttgtgcaataaggatgaactcatcatgtttca |
94 |
Q |
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| T |
16602002 |
ttggaagtttgcatgaaactcggaaggtgttgatttccatgcgcaacaaccttttgcgcaatgaggatgagttcatcatgtttca |
16602086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 612 - 863
Target Start/End: Original strand, 22526433 - 22526684
Alignment:
| Q |
612 |
ctaaatcttaaactcatttttgagcttgttgagattagtcttcgaatgagccaatttagcatcaagaaggtctccttcggtttttagttttgctatttca |
711 |
Q |
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| T |
22526433 |
ctaaatcttaaactcagctatgagcttgttgagatttgccttcgaatgatctagcttgttatcaagaaggtccccttcgctggtcaattttgctacctca |
22526532 |
T |
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| Q |
712 |
gcatttttccgctttgaaatttcgaccttcctgatggtaagatttgcttcctttttaagccgttcatctttttccaaaagggatttcttgttcgacttca |
811 |
Q |
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| T |
22526533 |
gcatttagccgtttggcatcttcgaccttcttgatggtaagatatgcttccttcctaagactttcatatttttccaagagggattttttgttcgacttca |
22526632 |
T |
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| Q |
812 |
attcttgaattgccttttcatattcggaaatggcaaggtcgtactcctccat |
863 |
Q |
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| T |
22526633 |
atttttgaattgccttttcatgttcgaaaatggcaaggtcgtactcttccat |
22526684 |
T |
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