View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4842-Insertion-2 (Length: 918)

Name: NF4842-Insertion-2
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4842-Insertion-2
NF4842-Insertion-2
[»] chr2 (14 HSPs)
chr2 (8-365)||(12794941-12795295)
chr2 (685-747)||(12795296-12795358)
chr2 (797-918)||(12795855-12795974)
chr2 (797-874)||(27317453-27317531)
chr2 (783-873)||(30331811-30331902)
chr2 (779-871)||(42419849-42419942)
chr2 (783-878)||(23974407-23974503)
chr2 (799-877)||(2142730-2142809)
chr2 (811-847)||(40682341-40682377)
chr2 (806-857)||(39073638-39073689)
chr2 (797-874)||(4606999-4607077)
chr2 (825-877)||(18179051-18179104)
chr2 (783-840)||(24100988-24101045)
chr2 (790-851)||(31744365-31744426)
[»] chr5 (12 HSPs)
chr5 (792-873)||(39594876-39594958)
chr5 (783-872)||(9107150-9107240)
chr5 (783-857)||(10640013-10640087)
chr5 (806-857)||(11064749-11064800)
chr5 (800-878)||(32941546-32941626)
chr5 (801-874)||(6521156-6521230)
chr5 (783-857)||(15015904-15015977)
chr5 (811-857)||(19460262-19460308)
chr5 (811-865)||(12425661-12425716)
chr5 (815-873)||(41419411-41419470)
chr5 (815-873)||(41534530-41534589)
chr5 (790-840)||(42228106-42228156)
[»] chr7 (13 HSPs)
chr7 (783-874)||(19302481-19302573)
chr7 (783-851)||(19022527-19022595)
chr7 (783-874)||(4970710-4970802)
chr7 (819-874)||(44822054-44822110)
chr7 (811-873)||(22296147-22296210)
chr7 (812-878)||(33266400-33266467)
chr7 (800-874)||(48140280-48140354)
chr7 (783-840)||(19214359-19214416)
chr7 (800-857)||(48470121-48470178)
chr7 (783-885)||(45593588-45593692)
chr7 (806-857)||(18765367-18765418)
chr7 (811-857)||(46280216-46280262)
chr7 (811-872)||(49019957-49020019)
[»] chr1 (12 HSPs)
chr1 (783-874)||(2295156-2295248)
chr1 (811-873)||(6102241-6102304)
chr1 (800-857)||(38001672-38001729)
chr1 (783-840)||(49938807-49938864)
chr1 (797-873)||(50644174-50644251)
chr1 (806-857)||(33204330-33204381)
chr1 (798-857)||(39658445-39658504)
chr1 (223-279)||(52417940-52417996)
chr1 (797-875)||(3233932-3234011)
chr1 (820-857)||(7028399-7028436)
chr1 (812-872)||(24334284-24334345)
chr1 (798-873)||(46504137-46504214)
[»] chr6 (8 HSPs)
chr6 (353-487)||(15439516-15439647)
chr6 (811-885)||(21405061-21405136)
chr6 (243-292)||(15282825-15282874)
chr6 (797-857)||(10645321-10645381)
chr6 (522-578)||(11781843-11781899)
chr6 (811-878)||(31623638-31623706)
chr6 (390-484)||(11781950-11782041)
chr6 (806-874)||(34404644-34404713)
[»] chr4 (13 HSPs)
chr4 (797-876)||(52315113-52315193)
chr4 (783-850)||(21731599-21731666)
chr4 (812-878)||(27043744-27043811)
chr4 (783-865)||(29657444-29657527)
chr4 (797-874)||(55437150-55437228)
chr4 (800-857)||(40174634-40174691)
chr4 (813-872)||(15173223-15173283)
chr4 (783-874)||(54426103-54426195)
chr4 (812-878)||(2244140-2244207)
chr4 (812-874)||(39691067-39691130)
chr4 (811-873)||(41336848-41336911)
chr4 (814-871)||(43506026-43506084)
chr4 (812-857)||(1706711-1706756)
[»] chr8 (17 HSPs)
chr8 (797-883)||(32840895-32840982)
chr8 (783-856)||(26771325-26771398)
chr8 (806-873)||(1096573-1096641)
chr8 (811-874)||(38602415-38602479)
chr8 (811-880)||(36963266-36963336)
chr8 (806-873)||(1074187-1074255)
chr8 (811-874)||(30251372-30251436)
chr8 (800-851)||(38648428-38648479)
chr8 (811-857)||(1058013-1058059)
chr8 (800-842)||(6882004-6882046)
chr8 (798-866)||(6950396-6950466)
chr8 (783-841)||(28763428-28763486)
chr8 (811-880)||(42893402-42893472)
chr8 (806-878)||(26215542-26215615)
chr8 (812-857)||(27028920-27028965)
chr8 (785-881)||(35534524-35534621)
chr8 (800-857)||(43717870-43717927)
[»] chr3 (9 HSPs)
chr3 (818-876)||(25447161-25447220)
chr3 (783-857)||(31365124-31365198)
chr3 (797-851)||(37389257-37389311)
chr3 (800-857)||(402478-402535)
chr3 (800-857)||(18405767-18405824)
chr3 (783-852)||(20257596-20257665)
chr3 (800-857)||(21367744-21367801)
chr3 (800-857)||(24085274-24085331)
chr3 (835-879)||(30657398-30657443)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-139; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 8 - 365
Target Start/End: Original strand, 12794941 - 12795295
Alignment:
Q  8 ggaaccagctattccttctgtagcccaagctcaatgtacacgaccaaatattgtaccagtggaatttgtgatgttaagtttcctcacaagaatttttaag 107  Q
    |||||||||||||||||||     ||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||| |||||| |||||||||||    
T  12794941 ggaaccagctattccttct-----ccaagctcaatgtccacaaccaaatactgtaccaatggaatttgtgatgttaagtttactcacacgaatttttaag 12795035  T
Q  108 aacataataatgaaaagagacatcgaacattgttagaactccatgagcaattaatgatatgtaaaaattcaaatggacaagagagtaaacatacaacaaa 207  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  12795036 aacataataatgaaaagagacatcgaacattattagaactccatgagcaattaatgaaatttaaaacttcaaatggacaagagagtaaacatacaacaaa 12795135  T
Q  208 ttccctaatgtccaatagttcaacttaagaaagttccaaaatctaagaaaaat-gggtgccctgtagaaaatgtgagttacgaagcaccta-gttttagg 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| |||||||     
T  12795136 ttccctaatgtccaatagttcaacttaagaaagttccaaaatctaagaaaaatggggtgccccgtagaaaatgtgagttatgaagcacctaggttttagt 12795235  T
Q  306 tgcaaggaagttcaagttgaagagtctaaaaggaaatttggggatgaggataacactagt 365  Q
    ||||||||||||||||||||||| || |||||||||  ||||||||||||||||| ||||    
T  12795236 tgcaaggaagttcaagttgaagactccaaaaggaaacctggggatgaggataacattagt 12795295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 685 - 747
Target Start/End: Original strand, 12795296 - 12795358
Alignment:
Q  685 tttgagctacaatttcaacatgtttcagcctaattaactcaacagaccaaaggcaaaatacat 747  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  12795296 tttgagctacaatttcaacatgtttcagcctaattgactcaacagaccaaaggcaaaaaacat 12795358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 797 - 918
Target Start/End: Original strand, 12795855 - 12795974
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaataagtcaattcaaacagaccccaagactaacggtagtgg 896  Q
    |||||||| |||||||||||||||||  |||||||||||||| || | ||||  ||   ||||||||||| |||||||||||||||||| || |||| ||    
T  12795855 agttgttttcatacgttctcccaaactgtctcacaaaacttacgtagatagactaa---aataagtcaatccaaacagaccccaagactgacagtagcgg 12795951  T
Q  897 ctgg-tatctatttccttcgtag 918  Q
    |||| ||||||||||||| ||||    
T  12795952 ctggatatctatttccttggtag 12795974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 797 - 874
Target Start/End: Original strand, 27317453 - 27317531
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    |||||||| |||| |||||| |||||| ||||| ||||||||||||||||||||| ||| ||||||||||| |||||||    
T  27317453 agttgttttcataagttctctcaaacagtctcataaaacttatgtcggtagataagctcaaataagtcaatccaaacag 27317531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 783 - 873
Target Start/End: Original strand, 30331811 - 30331902
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaact-caataagtcaattcaaaca 873  Q
    ||||||||||| | || | ||| |||| ||||||||||||| |||||||||||||||||| |||||||| ||  ||||||||||| ||||||    
T  30331811 tgaaaattgtcataaggttttttcataagttctcccaaacagtctcacaaaacttatgtcagtagataagctgaaataagtcaatccaaaca 30331902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 779 - 871
Target Start/End: Original strand, 42419849 - 42419942
Alignment:
Q  779 aagctgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaa 871  Q
    |||||||||| |||| | || ||||| | || ||||||||||||| ||||| |||||||||||| | |||||||||| ||||||||||| ||||    
T  42419849 aagctgaaaaatgtcataagctgttttcgtaagttctcccaaacagtctcaaaaaacttatgtcagaagataaactcaaataagtcaatccaaa 42419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 783 - 878
Target Start/End: Complemental strand, 23974503 - 23974407
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagaccc 878  Q
    ||||||||||| | || ||||| |||| ||||||| |||||||||||| || || ||||| |||||||||| | ||||||||||| |||||| ||||    
T  23974503 tgaaaattgtcataagctgttttcataagttctccaaaacaatctcactaatctcatgtcagtagataaacccaaataagtcaatccaaacataccc 23974407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 799 - 877
Target Start/End: Original strand, 2142730 - 2142809
Alignment:
Q  799 ttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagacc 877  Q
    |||||| |||| ||||||||||||| ||||| ||||||||||   |||||||||||| ||||||||||  ||||||||||    
T  2142730 ttgttttcataagttctcccaaacagtctcataaaacttatgcatgtagataaactcaaataagtcaaaccaaacagacc 2142809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 811 - 847
Target Start/End: Complemental strand, 40682377 - 40682341
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtag 847  Q
    |||||||||||||||||||||||||||||||| ||||    
T  40682377 gttctcccaaacaatctcacaaaacttatgtcagtag 40682341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 806 - 857
Target Start/End: Complemental strand, 39073689 - 39073638
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    |||| ||||| ||||||| |||||||||| |||||||||||||| |||||||    
T  39073689 cataagttcttccaaacagtctcacaaaaattatgtcggtagatgaactcaa 39073638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 874
Target Start/End: Original strand, 4606999 - 4607077
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    |||||||| || | ||||||||||| | ||||||||||||||| | ||||||||| ||| |||||| |||| |||||||    
T  4606999 agttgttttcacaagttctcccaaatagtctcacaaaacttatattggtagataagctcaaataagccaatccaaacag 4607077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 825 - 877
Target Start/End: Original strand, 18179051 - 18179104
Alignment:
Q  825 tctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagacc 877  Q
    |||||||||||||||||  |||||||| ||| ||||||||||| ||||||||||    
T  18179051 tctcacaaaacttatgttagtagataagctcaaataagtcaatccaaacagacc 18179104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 24100988 - 24101045
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatg 840  Q
    |||| |||||| | || ||||| |||| ||||||||||||| ||||||||||||||||    
T  24100988 tgaatattgtcataaggtgtttccataagttctcccaaacagtctcacaaaacttatg 24101045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 790 - 851
Target Start/End: Original strand, 31744365 - 31744426
Alignment:
Q  790 tgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataa 851  Q
    |||||| || ||||| || | |||||| |||||| ||||| |||||||||||||||||||||    
T  31744365 tgtcttaagctgttttcaaaagttctctcaaacagtctcagaaaacttatgtcggtagataa 31744426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 792 - 873
Target Start/End: Original strand, 39594876 - 39594958
Alignment:
Q  792 tcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    ||||||| ||||| |||| ||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||    
T  39594876 tcttcagctgttttcataagttgtcccaaacaatctaacaaaacttatgtcggtagataagctcaaataagtcaatccaaaca 39594958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 783 - 872
Target Start/End: Original strand, 9107150 - 9107240
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaac 872  Q
    ||||||||||| | || ||||| |||  ||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||||| |||||    
T  9107150 tgaaaattgtcctaagctgttttcatgagttctcccaaacattctcacaaaacttatgtcactagataaactcaaataagtcaatccaaac 9107240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 783 - 857
Target Start/End: Original strand, 10640013 - 10640087
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    |||||| |||| | || ||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||    
T  10640013 tgaaaaatgtcataagctgttttcataagttctcccaaacaatatcacaaaacttatgtcagtagataaactcaa 10640087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 806 - 857
Target Start/End: Original strand, 11064749 - 11064800
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    |||| |||||| |||||||||||||||||||||||| |||||||||||||||    
T  11064749 cataagttctctcaaacaatctcacaaaacttatgttggtagataaactcaa 11064800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 800 - 878
Target Start/End: Original strand, 32941546 - 32941626
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaa-ctc-aataagtcaattcaaacagaccc 878  Q
    ||||| |||| ||||||||||||  ||||||| |||||||||| ||||||||| ||| ||||||||||| |||||||||||    
T  32941546 tgttttcataagttctcccaaacggtctcacagaacttatgtcagtagataaagctctaataagtcaatccaaacagaccc 32941626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 801 - 874
Target Start/End: Original strand, 6521156 - 6521230
Alignment:
Q  801 gtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    |||| |||| ||||||||||||||||||||||||| |||||| |||| | | ||| ||||||||||| |||||||    
T  6521156 gttttcataagttctcccaaacaatctcacaaaacatatgtcagtagttcagctctaataagtcaatccaaacag 6521230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 783 - 857
Target Start/End: Original strand, 15015904 - 15015977
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||||||||||||| |  ||| |||| ||||||||||||| ||||||||| |||||||| |||||||| |||||    
T  15015904 tgaaaattgtcttcaatatttt-cataagttctcccaaacagtctcacaaagcttatgtcagtagataagctcaa 15015977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 811 - 857
Target Start/End: Complemental strand, 19460308 - 19460262
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||    
T  19460308 gttctcccaaacaatctcactaaacttatgccagtagataaactcaa 19460262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 865
Target Start/End: Original strand, 12425661 - 12425716
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaa 865  Q
    ||||||||||||| |||||||||||||||| | |||||||| ||| ||||||||||    
T  12425661 gttctcccaaacagtctcacaaaacttatgacagtagataagctcaaataagtcaa 12425716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 815 - 873
Target Start/End: Original strand, 41419411 - 41419470
Alignment:
Q  815 tcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    |||||||||||||||||||| ||||||| |||||| | ||| ||||||||||| ||||||    
T  41419411 tcccaaacaatctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41419470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 815 - 873
Target Start/End: Original strand, 41534530 - 41534589
Alignment:
Q  815 tcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    |||||||||||||||||||| ||||||| |||||| | ||| ||||||||||| ||||||    
T  41534530 tcccaaacaatctcacaaaatttatgtcagtagattagctcaaataagtcaatccaaaca 41534589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 790 - 840
Target Start/End: Original strand, 42228106 - 42228156
Alignment:
Q  790 tgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatg 840  Q
    |||||| || ||||| |||| |||||||||||||||||||| |||||||||    
T  42228106 tgtcttaagctgtttccataagttctcccaaacaatctcacgaaacttatg 42228156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 4e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 783 - 874
Target Start/End: Complemental strand, 19302573 - 19302481
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    ||||||||||| | || ||||| ||||  |||||||||| | |||||||||||||||||| |||||||| ||| |||||||||||||||||||    
T  19302573 tgaaaattgtcataagctgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaacag 19302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 783 - 851
Target Start/End: Complemental strand, 19022595 - 19022527
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataa 851  Q
    ||||||||||| | |||||||| ||||  ||||||||||||||||||||||||| ||||| ||||||||    
T  19022595 tgaaaattgtcataagttgttttcataaattctcccaaacaatctcacaaaactcatgtcagtagataa 19022527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 783 - 874
Target Start/End: Complemental strand, 4970802 - 4970710
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    ||||||||| | | |||||||| |||| ||||||||||||| |||||||| |||||||||   |||||| ||| ||||||||||| |||||||    
T  4970802 tgaaaattgccataagttgttttcataagttctcccaaacagtctcacaagacttatgtcacgagataagctcaaataagtcaatccaaacag 4970710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 819 - 874
Target Start/End: Original strand, 44822054 - 44822110
Alignment:
Q  819 aaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||| |||||||    
T  44822054 aaacaatctcacaaaacttatgtcagcagataaactcaaataagtcaatccaaacag 44822110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 811 - 873
Target Start/End: Complemental strand, 22296210 - 22296147
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    ||||||||||||||||||||| ||||||||||    ||||||||| ||||||||||||||||||    
T  22296210 gttctcccaaacaatctcacagaacttatgtcaccggataaactcaaataagtcaattcaaaca 22296147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 812 - 878
Target Start/End: Complemental strand, 33266467 - 33266400
Alignment:
Q  812 ttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagaccc 878  Q
    |||||||||| | | ||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||    
T  33266467 ttctcccaaatagtttcacaaaacttatgtcggtagataagctcaaataagtcaatccaaacataccc 33266400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 800 - 874
Target Start/End: Original strand, 48140280 - 48140354
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaataagtcaattcaaacag 874  Q
    ||||| ||||| |||||||||||| ||||||| |||||||| |  ||||||||||| ||||| |||| |||||||    
T  48140280 tgttttcatacattctcccaaacagtctcacataacttatgccaatagataaactctataagccaatccaaacag 48140354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 783 - 840
Target Start/End: Complemental strand, 19214416 - 19214359
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatg 840  Q
    ||||||||||| |  | ||||| |||| ||||||||||||||||||||||||||||||    
T  19214416 tgaaaattgtcatttgctgttttcataagttctcccaaacaatctcacaaaacttatg 19214359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 800 - 857
Target Start/End: Original strand, 48470121 - 48470178
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||  ||||||| |||||    
T  48470121 tgttttcataagttctcccaaacaatctcataaaacttatgtctatagataagctcaa 48470178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 783 - 885
Target Start/End: Original strand, 45593588 - 45593692
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggt-agataaactc-aataagtcaattcaaacagacccca 880  Q
    |||||| |||| |||| |||||  ||| ||||||||||||| ||||||||| |||||||| || | |||||||| |||||| |||| ||||||| || ||    
T  45593588 tgaaaaatgtcatcagatgtttttataagttctcccaaacagtctcacaaagcttatgtcagtaatataaactcaaataagccaatccaaacaggcctca 45593687  T
Q  881 agact 885  Q
    |||||    
T  45593688 agact 45593692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 806 - 857
Target Start/End: Original strand, 18765367 - 18765418
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    |||| ||||||||||||| ||||||||||||||||||  ||||||| |||||    
T  18765367 cataagttctcccaaacagtctcacaaaacttatgtcaatagataagctcaa 18765418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 857
Target Start/End: Complemental strand, 46280262 - 46280216
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||||||||||| ||||||||||| |||||| | ||||||||||||    
T  46280262 gttctcccaaacagtctcacaaaacatatgtcagcagataaactcaa 46280216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 872
Target Start/End: Original strand, 49019957 - 49020019
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaact-caataagtcaattcaaac 872  Q
    ||||||||||||| ||||||||||| |||||| | |||||| || |||||||||||| |||||    
T  49019957 gttctcccaaacagtctcacaaaacatatgtcagcagataagctacaataagtcaatccaaac 49020019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 783 - 874
Target Start/End: Original strand, 2295156 - 2295248
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    ||||||||||| | || ||||| |||| ||||||||||||| |||||||||||||||| | |||||||| ||| |||||| ||||||||||||    
T  2295156 tgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgccagtagataagctcaaataagccaattcaaacag 2295248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 811 - 873
Target Start/End: Original strand, 6102241 - 6102304
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| |||||    
T  6102241 gttctcccaaacaatctcacaaaatttatgccggtagataaactcaaataagtcaatttaaaca 6102304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 800 - 857
Target Start/End: Original strand, 38001672 - 38001729
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||| ||||||||||||| |||||||||||||||||| || |||||||||||    
T  38001672 tgttttcataagttctcccaaacagtctcacaaaacttatgtcagttgataaactcaa 38001729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 783 - 840
Target Start/End: Original strand, 49938807 - 49938864
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatg 840  Q
    ||||||||||| | || ||||| |||| ||||||||||||||||||||||||||||||    
T  49938807 tgaaaattgtcataagctgttttcataagttctcccaaacaatctcacaaaacttatg 49938864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 797 - 873
Target Start/End: Complemental strand, 50644251 - 50644174
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    |||||||| |||| ||||||||||||| ||||||||||| |||||  |||||||| ||| ||||||||||| ||||||    
T  50644251 agttgttttcataagttctcccaaacagtctcacaaaacatatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 806 - 857
Target Start/End: Complemental strand, 33204381 - 33204330
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||| |||||    
T  33204381 cataagttctcccaaacagtctcacaaaacttatgtcagtagataagctcaa 33204330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 798 - 857
Target Start/End: Complemental strand, 39658504 - 39658445
Alignment:
Q  798 gttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||||| |||  |||||||||| |||||||||||||||||||||||| ||||| |||||    
T  39658504 gttgttttcatgagttctcccaatcaatctcacaaaacttatgtcggtggataagctcaa 39658445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 52417940 - 52417996
Alignment:
Q  223 tagttcaacttaagaaagttccaaaatctaagaaaaatgggtgccctgtagaaaatg 279  Q
    ||||||||| ||| |||||||| |||||||||||||||||   ||||||||||||||    
T  52417940 tagttcaacctaaaaaagttccgaaatctaagaaaaatggaaaccctgtagaaaatg 52417996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 797 - 875
Target Start/End: Complemental strand, 3234011 - 3233932
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacaga 875  Q
    |||||||| |||| |||||||| |||| |||||||||||||| | |  ||||||| ||| ||||||||||| ||||||||    
T  3234011 agttgttttcataagttctccctaacagtctcacaaaacttacggcactagataagctcaaataagtcaatccaaacaga 3233932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 820 - 857
Target Start/End: Original strand, 7028399 - 7028436
Alignment:
Q  820 aacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  7028399 aacaatctcacaaaacttatgtcggcagataagctcaa 7028436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 872
Target Start/End: Original strand, 24334284 - 24334345
Alignment:
Q  812 ttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaac 872  Q
    ||||| |||| | |||||||||||||||||| || ||||||||| ||||||||||| |||||    
T  24334284 ttctctcaaatagtctcacaaaacttatgtccgttgataaactcaaataagtcaatccaaac 24334345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 798 - 873
Target Start/End: Complemental strand, 46504214 - 46504137
Alignment:
Q  798 gttgtttacatacgttctcccaaacaatctcacaaa-acttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    ||||||| |||| | ||| || |||| ||||||||| ||||||| |||||||||||||| ||||||||||||| ||||    
T  46504214 gttgttttcataagctctaccgaacagtctcacaaatacttatgccggtagataaactcaaataagtcaattccaaca 46504137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 353 - 487
Target Start/End: Original strand, 15439516 - 15439647
Alignment:
Q  353 ggataacactagtgcaaaggatcattgtttcaaggtagaaaatgtgagttataaagctcctagtttgaagtacatgaaagttccagctgaaaggtctaaa 452  Q
    |||||||||| || ||||||||  | |||| |||| |||||||||||   || ||||||||| ||| ||| ||| ||| |||||||||||||||||||||    
T  15439516 ggataacactggtccaaaggattgtggtttaaagggagaaaatgtgaaaaatgaagctcctattttaaagcacaagaatgttccagctgaaaggtctaaa 15439615  T
Q  453 aggaaactcaaggaggataacactgatgcaaagga 487  Q
     ||||||| |    ||||||||||| |||||||||    
T  15439616 cggaaactta---tggataacactggtgcaaagga 15439647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 811 - 885
Target Start/End: Complemental strand, 21405136 - 21405061
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagaccccaagact 885  Q
    |||| |||||| | |||||||||||||||||| ||| |||| ||| ||||||||||| ||||||||||| ||||||    
T  21405136 gttcccccaaatattctcacaaaacttatgtcagtatataagctcaaataagtcaatccaaacagaccctaagact 21405061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 15282874 - 15282825
Alignment:
Q  243 ccaaaatctaagaaaaatgggtgccctgtagaaaatgtgagttacgaagc 292  Q
    |||||||||||||||||| ||||| || |||||||||||||||| |||||    
T  15282874 ccaaaatctaagaaaaattggtgctctttagaaaatgtgagttatgaagc 15282825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 797 - 857
Target Start/End: Complemental strand, 10645381 - 10645321
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    |||||||| |||| ||||||||||||| ||| ||||||||||||||  ||||||| |||||    
T  10645381 agttgttttcataagttctcccaaacagtcttacaaaacttatgtcattagataacctcaa 10645321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 522 - 578
Target Start/End: Complemental strand, 11781899 - 11781843
Alignment:
Q  522 tgaagatgaataatgggagaagaaggttcatgaaatcatcaaaacttgaggtcaatg 578  Q
    |||||||||||||||||| ||||||| ||  ||||||||||||||  ||||||||||    
T  11781899 tgaagatgaataatgggataagaaggctcgcgaaatcatcaaaacccgaggtcaatg 11781843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 811 - 878
Target Start/End: Original strand, 31623638 - 31623706
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa-taagtcaattcaaacagaccc 878  Q
    |||||||||||| | |||| |||||||| | | ||||||||| |||| |||||||||||||||||||||    
T  31623638 gttctcccaaaccacctcaaaaaacttaggccagtagataaattcaaataagtcaattcaaacagaccc 31623706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 484
Target Start/End: Complemental strand, 11782041 - 11781950
Alignment:
Q  390 gaaaatgtgagttataaagctcctagtttgaagtacatgaaagttccagctgaaaggtctaaaaggaaactcaaggaggataacactgatgcaaa 484  Q
    |||||| ||||| || |||||||||| || | ||||| | |||||||||||||| | |||||||||||| |||  || |||||||||||||||||    
T  11782041 gaaaatatgagtcatgaagctcctagattcaggtacaaggaagttccagctgaaggttctaaaaggaaagtca--ga-gataacactgatgcaaa 11781950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 806 - 874
Target Start/End: Complemental strand, 34404713 - 34404644
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    |||| ||||||||||| | || ||||||||||||||| || ||||||||| ||||||| ||| |||||||    
T  34404713 cataagttctcccaaagactcacacaaaacttatgtcagttgataaactcaaataagtaaatccaaacag 34404644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 797 - 876
Target Start/End: Complemental strand, 52315193 - 52315113
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagac 876  Q
    ||||||||  ||| ||||| |||||||||||||||||||||| ||| |||||||||||| ||||||||||| |||| ||||    
T  52315193 agttgttttgataagttcttccaaacaatctcacaaaacttacgtcagtagataaactcaaataagtcaatccaaagagac 52315113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 783 - 850
Target Start/End: Complemental strand, 21731666 - 21731599
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagata 850  Q
    ||||||||||  | || ||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  21731666 tgaaaattgtgataagctgttttcataagttctcccaaacaatctcacaaaacttatgtcagtagata 21731599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 812 - 878
Target Start/End: Complemental strand, 27043811 - 27043744
Alignment:
Q  812 ttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagaccc 878  Q
    |||| ||||||| | |||||||||||||||| |||||||| ||| ||||||||||| |||||||||||    
T  27043811 ttcttccaaacagtttcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacagaccc 27043744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 783 - 865
Target Start/End: Original strand, 29657444 - 29657527
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaa 865  Q
    ||||||||||| | || ||||| |||| |||||| ||| |||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  29657444 tgaaaattgtcataagctgttttcataagttctctcaagcaatctcacaaaacttgtgttggtagataagctcaaataagtcaa 29657527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 797 - 874
Target Start/End: Original strand, 55437150 - 55437228
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    |||||||| |||| |||||  |||||||| |||||||||||||| | |||||||||||| |||||| |||| |||||||    
T  55437150 agttgttttcataagttctttcaaacaatttcacaaaacttatggcagtagataaactcaaataagccaatccaaacag 55437228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 800 - 857
Target Start/End: Original strand, 40174634 - 40174691
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||| ||| ||||||||| |||||||||||||||||  ||||||||||||||    
T  40174634 tgttttcataagttatcccaaacagtctcacaaaacttatgttagtagataaactcaa 40174691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 813 - 872
Target Start/End: Complemental strand, 15173283 - 15173223
Alignment:
Q  813 tctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaac 872  Q
    ||||||||||| |||||||||||||||||| ||||||||  || ||||||||||| |||||    
T  15173283 tctcccaaacagtctcacaaaacttatgtcagtagataagttcaaataagtcaatccaaac 15173223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 783 - 874
Target Start/End: Original strand, 54426103 - 54426195
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    ||||||||||| | || ||||| | || |||||||||| || |||||||||||||||| | |||||||| ||| |||||| |||| |||||||    
T  54426103 tgaaaattgtcataagctgttttcctaagttctcccaagcagtctcacaaaacttatgccagtagataagctcaaataagccaatccaaacag 54426195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 878
Target Start/End: Original strand, 2244140 - 2244207
Alignment:
Q  812 ttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagaccc 878  Q
    |||||||||||| | ||| |||||||||||| ||||||||||||  |||| ||||| |||||||||||    
T  2244140 ttctcccaaacagtttcaaaaaacttatgtcagtagataaactcggataaatcaatccaaacagaccc 2244207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 874
Target Start/End: Complemental strand, 39691130 - 39691067
Alignment:
Q  812 ttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    ||||| |||||| ||||||||||||||||   |||||||| ||| |||||||||||||||||||    
T  39691130 ttctctcaaacagtctcacaaaacttatgctagtagataagctcaaataagtcaattcaaacag 39691067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 811 - 873
Target Start/End: Original strand, 41336848 - 41336911
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    ||||| || ||| ||||||||||||||||||  |||||||||||| ||||||||||| ||||||    
T  41336848 gttcttcctaactatctcacaaaacttatgtgagtagataaactcaaataagtcaatccaaaca 41336911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 814 - 871
Target Start/End: Original strand, 43506026 - 43506084
Alignment:
Q  814 ctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaa 871  Q
    ||||| |||| ||||||||||||| ||||||| ||||||||| |||||||| |||||||    
T  43506026 ctccctaacagtctcacaaaacttttgtcggtggataaactcaaataagtcgattcaaa 43506084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 857
Target Start/End: Original strand, 1706711 - 1706756
Alignment:
Q  812 ttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||||  |||||||||||||||||| ||||||||||||||    
T  1706711 ttctctcaaaccgtctcacaaaacttatgtcagtagataaactcaa 1706756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 797 - 883
Target Start/End: Complemental strand, 32840982 - 32840895
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa-taagtcaattcaaacagaccccaaga 883  Q
    |||||||| |||| ||||||||||||| |||| |||||||| |||  |||||||| ||||| |||||||||||||| |||||| ||||    
T  32840982 agttgttttcataagttctcccaaacagtctcgcaaaacttgtgtgagtagataagctcaagtaagtcaattcaaatagaccctaaga 32840895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 783 - 856
Target Start/End: Original strand, 26771325 - 26771398
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactca 856  Q
    ||||||||||| | || ||||| |||| ||||||||||||| |||||||||||||||| | |||||||| ||||    
T  26771325 tgaaaattgtcataagctgttttcataagttctcccaaacagtctcacaaaacttatgcccgtagataagctca 26771398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 806 - 873
Target Start/End: Original strand, 1096573 - 1096641
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    |||| ||||||||||| ||||||||||||||||||||  || |||||||| ||||||||||| ||||||    
T  1096573 catatgttctcccaaaaaatctcacaaaacttatgtcactaaataaactcaaataagtcaatccaaaca 1096641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 811 - 874
Target Start/End: Original strand, 38602415 - 38602479
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||| ||||||||||| |||||||    
T  38602415 gttctcccaaacagcctcacaaaacttatgtcagtagataagctcaaataagtcaatccaaacag 38602479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 811 - 880
Target Start/End: Complemental strand, 36963336 - 36963266
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagacccca 880  Q
    ||||||||||||| |||||||||||||||| | |||||| | ||| |||||| |||| |||||||||||||    
T  36963336 gttctcccaaacagtctcacaaaacttatgccagtagattagctcaaataagccaatccaaacagacccca 36963266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 806 - 873
Target Start/End: Complemental strand, 1074255 - 1074187
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaaca 873  Q
    ||||||||||||| || ||||||||||||||||| |  ||| |||||||| ||||||||||| ||||||    
T  1074255 catacgttctcccgaaaaatctcacaaaacttatatgagtaaataaactcaaataagtcaatccaaaca 1074187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 811 - 874
Target Start/End: Complemental strand, 30251436 - 30251372
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacag 874  Q
    ||||||||||||| |||||| ||||||||||| |||||||| ||| |||||| |||| |||||||    
T  30251436 gttctcccaaacagtctcacgaaacttatgtcagtagataagctcaaataagccaatccaaacag 30251372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 800 - 851
Target Start/End: Original strand, 38648428 - 38648479
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataa 851  Q
    ||||| |||| | ||||||||||| |||||||||||||||||| ||||||||    
T  38648428 tgttttcataaggtctcccaaacagtctcacaaaacttatgtcagtagataa 38648479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 857
Target Start/End: Complemental strand, 1058059 - 1058013
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||||||||||| |||||||||||||||||  |||||||| |||||    
T  1058059 gttctcccaaacagtctcacaaaacttatgtaagtagataagctcaa 1058013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 800 - 842
Target Start/End: Original strand, 6882004 - 6882046
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtc 842  Q
    ||||| |||| ||||||||||||| ||||||||||||||||||    
T  6882004 tgttttcataggttctcccaaacagtctcacaaaacttatgtc 6882046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 798 - 866
Target Start/End: Original strand, 6950396 - 6950466
Alignment:
Q  798 gttgtttacatacgttctcccaaacaatctcacaaa-acttatgtcggtagataaactc-aataagtcaat 866  Q
    |||||||||||| | |||||||||||||||||||||   ||||| | |||||||||||| |||||||||||    
T  6950396 gttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaataagtcaat 6950466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 841
Target Start/End: Original strand, 28763428 - 28763486
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgt 841  Q
    ||||||||||  | || ||||| |||| ||||||||||||| |||||||||||||||||    
T  28763428 tgaaaattgttataagctgttttcataagttctcccaaacagtctcacaaaacttatgt 28763486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 811 - 880
Target Start/End: Complemental strand, 42893472 - 42893402
Alignment:
Q  811 gttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagacccca 880  Q
    ||||||||||||| |  ||||||| ||||| |||||||||||||| ||||||| ||| |||||||| ||||    
T  42893472 gttctcccaaacactagcacaaaaattatgccggtagataaactcaaataagttaatccaaacagagccca 42893402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 806 - 878
Target Start/End: Original strand, 26215542 - 26215615
Alignment:
Q  806 catacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagaccc 878  Q
    |||| |||||||||||||||||||||||||||  ||  ||| ||||  || ||||||||||| |||||||||||    
T  26215542 cataagttctcccaaacaatctcacaaaacttgcgtttgtaaataagttcaaataagtcaatccaaacagaccc 26215615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 857
Target Start/End: Original strand, 27028920 - 27028965
Alignment:
Q  812 ttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||||||||||||||||| ||||||||| | || |||||||||||    
T  27028920 ttctcccaaacaatctcactaaacttatgccagtggataaactcaa 27028965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 881
Target Start/End: Complemental strand, 35534621 - 35534524
Alignment:
Q  785 aaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagaccccaa 881  Q
    ||||||||| | || ||||| || | |||||| |||||| |||||||||||||||||  |||||||| ||| ||||||||| |  |||||| ||||||    
T  35534621 aaaattgtcataagctgttttcacaagttctctcaaacagtctcacaaaacttatgttagtagataagctcaaataagtcattctaaacaggccccaa 35534524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 800 - 857
Target Start/End: Complemental strand, 43717927 - 43717870
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||| ||||||||||| | ||||||||||||||||||  ||||||| |||||    
T  43717927 tgttttcataagttctcccaaatagtctcacaaaacttatgtcaatagataagctcaa 43717870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 818 - 876
Target Start/End: Complemental strand, 25447220 - 25447161
Alignment:
Q  818 caaacaatctcacaaaacttatgtcggtagataaactc-aataagtcaattcaaacagac 876  Q
    |||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||    
T  25447220 caaacagtctcacaaaacttatgtcagtagataaactcaaataagtcaatccaaacagac 25447161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 783 - 857
Target Start/End: Complemental strand, 31365198 - 31365124
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||||||||| | || || || |||| ||||||||||||| |||||||||||||||| |  ||||||| |||||    
T  31365198 tgaaaattgtcataagctgctttcataagttctcccaaacagtctcacaaaacttatgccaatagataagctcaa 31365124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 797 - 851
Target Start/End: Original strand, 37389257 - 37389311
Alignment:
Q  797 agttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataa 851  Q
    |||||||| |||| |||||||| || | |||||||||||||||||| ||||||||    
T  37389257 agttgttttcataagttctcccgaagagtctcacaaaacttatgtctgtagataa 37389311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 800 - 857
Target Start/End: Complemental strand, 402535 - 402478
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||||||||||||||||| |||  ||||||||||||  || |||||||||||    
T  402535 tgttttcatacgttctcccaaacagtcttgcaaaacttatgttagttgataaactcaa 402478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 800 - 857
Target Start/End: Complemental strand, 18405824 - 18405767
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||| |||||  |||||| |||||||||||||||||| |||||||| |||||    
T  18405824 tgttttcataagttcttgcaaacagtctcacaaaacttatgtcagtagataagctcaa 18405767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 783 - 852
Target Start/End: Original strand, 20257596 - 20257665
Alignment:
Q  783 tgaaaattgtcttcagttgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaa 852  Q
    ||||||||||| | || || || |||| ||||||||||||| |||||||||| ||||| | |||||||||    
T  20257596 tgaaaattgtcattagctgctttcataagttctcccaaacagtctcacaaaatttatggctgtagataaa 20257665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 800 - 857
Target Start/End: Original strand, 21367744 - 21367801
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||| ||||||||||||| || |||||||||||||  ||||||||| |||||    
T  21367744 tgttttcataagttctcccaaacagtcccacaaaacttatgctggtagataatctcaa 21367801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 800 - 857
Target Start/End: Complemental strand, 24085331 - 24085274
Alignment:
Q  800 tgtttacatacgttctcccaaacaatctcacaaaacttatgtcggtagataaactcaa 857  Q
    ||||| |||| ||||||| || || |||||||||||||||| |||||||||| |||||    
T  24085331 tgttttcataagttctccaaaccagtctcacaaaacttatgccggtagataagctcaa 24085274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 835 - 879
Target Start/End: Original strand, 30657398 - 30657443
Alignment:
Q  835 cttatgtcggtagataaactcaa-taagtcaattcaaacagacccc 879  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||    
T  30657398 cttatgtcagtagataaactcaaataaatcaattcaaacagacccc 30657443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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