View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842-Insertion-3 (Length: 832)
Name: NF4842-Insertion-3
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 369 - 818
Target Start/End: Original strand, 2117241 - 2117690
Alignment:
| Q |
369 |
tttgcattatatgagttgttgcaacttgcaattgcaaatgaaaactatattctatgtaaacttggggtaaacttgtttatagcacaccggccaacgaatt |
468 |
Q |
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| T |
2117241 |
tttgcattatatgagttgttgcaacttgcaatggcaaatgaaaactatattctatgtaaacttggggtaaacttgtttatagcacaccggccaacgaatt |
2117340 |
T |
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| Q |
469 |
gaattggaatttgtatcaaaaaacgaaaagtgaacataatctactaatttggtttcatttcaacggaggctaaaattgatcatagagacctagaaatgat |
568 |
Q |
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| T |
2117341 |
gaattggaatttgtatcaaaaaacgaaaagtgaacataatctactaatttggtttcacttcaacggaggctaaaattgatcatagagacctagaaatgat |
2117440 |
T |
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| Q |
569 |
tcttacttagttgttgcattcggatagaattaaataaagtggaaatagattaagcccagctggactttataagtcctaagtctgacctgctataaaaatt |
668 |
Q |
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| T |
2117441 |
tcttacttagttgttgcattcggatagaattaaataaagtggaaatagattaagcccagctggactttataagtcctaagtctgacctgctataaaaatt |
2117540 |
T |
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| Q |
669 |
ttaggctcgaatctgaccttgaatatttctctttaaagctgtataatatatttaaggtcccctaaatacacataaatagttatctatcagatgtgtgttt |
768 |
Q |
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| T |
2117541 |
ttaggctcgaatctgaccttgaatatttctctttaaaactgtataatatatttaaggtctcctaaatacacataagtagttatctatcaaatgtgtattt |
2117640 |
T |
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| Q |
769 |
tttagaaaaatatacatctagataactatcatatgtaaatttaggaggcc |
818 |
Q |
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| T |
2117641 |
tttagaaaaatatacatctagataactatcatatgtgaattcaagaggcc |
2117690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 2116914 - 2117251
Alignment:
| Q |
8 |
gcaacggccactgatgtattaactttataaatgtgtaggataatgaccacagtggatccaaatctccacttctagggtttctctctcatccatatatatg |
107 |
Q |
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| T |
2116914 |
gcaacggccactgatgtattaactttataaatgtgtgggataatgaccacagtggatccaaatctccacttctagggtttctctctcatccatatatatg |
2117013 |
T |
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| Q |
108 |
tgtgcagggaatctaacatggggagttgattgattctgcaaggtttgaattcaacttggaaaactgttttctctgacaacatatggacatatatattaaa |
207 |
Q |
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| T |
2117014 |
tgtgcagggaatctaacatggggagttgattgattctgcaaggtttgaattcaacttggaaaactgttttctctgacaacatatggacatatatattaaa |
2117113 |
T |
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| Q |
208 |
caaacacttgaagaaaacaaggatggtgtcactaccnnnnnnnnnnnnnnnnnngcaggtatggtgcagtatttcattcaatattaatagtttaataggg |
307 |
Q |
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| T |
2117114 |
caaacacttgaagaaaacaaggatggtgtcactaccaaaaaatgaaaaataaaagcaagtatggtgcagtat----ttcaataataatagtttaataggc |
2117209 |
T |
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| Q |
308 |
caattttaatctttgtcttgtgcacttggc-tttgcattata |
348 |
Q |
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| T |
2117210 |
caattttaatctttgtcttgtgcacttggcttttgcattata |
2117251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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