View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4842-Insertion-4 (Length: 783)

Name: NF4842-Insertion-4
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4842-Insertion-4
NF4842-Insertion-4
[»] chr2 (9 HSPs)
chr2 (8-732)||(1188577-1189297)
chr2 (531-632)||(20156343-20156444)
chr2 (531-631)||(34027517-34027617)
chr2 (529-627)||(17881547-17881644)
chr2 (425-489)||(34027662-34027725)
chr2 (531-632)||(22551373-22551474)
chr2 (531-632)||(44766452-44766553)
chr2 (530-631)||(11997194-11997294)
chr2 (425-486)||(20156502-20156562)
[»] chr1 (8 HSPs)
chr1 (531-636)||(1923091-1923196)
chr1 (531-625)||(42658583-42658677)
chr1 (531-592)||(27199073-27199134)
chr1 (531-639)||(956066-956174)
chr1 (425-489)||(1923251-1923314)
chr1 (531-636)||(6303770-6303875)
chr1 (531-636)||(19451276-19451381)
chr1 (531-631)||(19350242-19350342)
[»] chr6 (6 HSPs)
chr6 (531-636)||(30878784-30878889)
chr6 (531-631)||(23929309-23929409)
chr6 (531-614)||(8634702-8634785)
chr6 (531-636)||(6196935-6197040)
chr6 (425-489)||(30878666-30878729)
chr6 (531-634)||(2300146-2300249)
[»] chr4 (9 HSPs)
chr4 (531-632)||(28099683-28099784)
chr4 (531-627)||(7853813-7853909)
chr4 (531-633)||(37369430-37369531)
chr4 (531-625)||(24887330-24887423)
chr4 (178-221)||(41762432-41762475)
chr4 (531-632)||(5104936-5105037)
chr4 (531-637)||(22202641-22202747)
chr4 (530-632)||(42721942-42722043)
chr4 (530-631)||(25446648-25446749)
[»] scaffold0287 (2 HSPs)
scaffold0287 (531-631)||(10863-10963)
scaffold0287 (178-215)||(11416-11453)
[»] chr7 (14 HSPs)
chr7 (531-631)||(3635122-3635222)
chr7 (531-632)||(40098472-40098572)
chr7 (531-632)||(48152332-48152432)
chr7 (531-626)||(9824683-9824776)
chr7 (531-626)||(10726608-10726701)
chr7 (425-489)||(40098364-40098427)
chr7 (425-481)||(48999535-48999591)
chr7 (531-634)||(44342998-44343101)
chr7 (531-634)||(47879698-47879801)
chr7 (531-634)||(47914776-47914879)
chr7 (265-311)||(9824971-9825017)
chr7 (265-311)||(10726896-10726942)
chr7 (178-215)||(3634632-3634669)
chr7 (531-632)||(12893954-12894055)
[»] chr3 (10 HSPs)
chr3 (531-632)||(46749965-46750065)
chr3 (531-634)||(7319075-7319177)
chr3 (207-309)||(10055369-10055473)
chr3 (531-637)||(3999142-3999248)
chr3 (427-487)||(46749846-46749906)
chr3 (531-634)||(995480-995583)
chr3 (207-309)||(10104247-10104351)
chr3 (565-636)||(10138719-10138790)
chr3 (207-309)||(10215119-10215223)
chr3 (531-635)||(12104053-12104158)
[»] chr5 (10 HSPs)
chr5 (535-613)||(2004469-2004547)
chr5 (531-641)||(30581984-30582093)
chr5 (531-638)||(21147726-21147833)
chr5 (531-613)||(9839993-9840075)
chr5 (173-220)||(40059490-40059537)
chr5 (423-489)||(9688526-9688592)
chr5 (535-576)||(2003378-2003419)
chr5 (441-489)||(28593167-28593215)
chr5 (604-639)||(39853419-39853454)
chr5 (531-628)||(9688372-9688469)
[»] chr8 (4 HSPs)
chr8 (531-634)||(10391691-10391794)
chr8 (531-629)||(24501324-24501422)
chr8 (531-632)||(33850940-33851041)
chr8 (565-642)||(37915547-37915624)


Alignment Details
Target: chr2 (Bit Score: 545; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 8 - 732
Target Start/End: Complemental strand, 1189297 - 1188577
Alignment:
Q  8 tacagtactcattcaataatctcacaattttattttttgtgccgtctaacgaaattctattttctcattagtttttgagttgcatagagtaaggtcgtta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  1189297 tacagtactcattcaataatctcacaattttattttttgtgccatctaacgaaattctattttctcattagtttt-gagttgcatagagtaaggtcgttt 1189199  T
Q  108 gttactttgttatgggattagaaaacttccgatctatatatagttagttagaactaccttcacttgaatgatgttagtggattgtgaggcttcctataat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1189198 gttactttgttatgggattagaaaacttccgatctatatatagttagttagaactaccttcacttgaatgatgttagtggattgtgaggcttcctataat 1189099  T
Q  208 ttcattcttgtaaattttttagttattggttcaatttattagttctaattcaaactattttgttaagatgactttatgtatagaaccatttttaatatgt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1189098 ttcattcttgtaaattttttagttattggttcaatttattagttctacttcaaactattttgttaagatgactctatgtatagaaccatttttaatatgt 1188999  T
Q  308 aataaattttgtcattcttnnnnnnnnnnnnngtaatacttgtcttcaaagtctattatatgttagaaacgaattaatagtgtactacacggtgttggaa 407  Q
    ||||||| ||  |||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1188998 aataaatctttgcattctt-aaaaaaaaaaatgtaatacttgtcttcaaagtctattatatgttagaaacgaattaatagtgtactacacggtgttggaa 1188900  T
Q  408 aagaagnnnnnnnntcacataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagtcttataatcttgatagcattt 507  Q
    ||||||        |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  1188899 aagaaggaaaaaaatcacataagcatctaagataaacacaattaacttcttaatataaatccttggaaatcttgatagtcttttaatcttgatagtattt 1188800  T
Q  508 ttattaaatattcataaacacaattaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttt 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  1188799 ttattaaatattcataaacacaattaaaatcttaaaagtcattcaaatcttgcataatcttttaaaattcattagactttttcatacaaaaattttcttt 1188700  T
Q  608 taaaattttaatccaatacaccccccttagatttttataactattgctggtaaataaataaagatattaaatgtgcatttttcttttagggatattaaat 707  Q
    ||||||  |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  1188699 taaaatcctaatccaataca-cccccttagatttttataa-tattgttggtaaataaataaagatattaaatgtcaatttttcttttagggatattaaat 1188602  T
Q  708 gtcaaaattgtacatcaccaaatct 732  Q
     ||||||||||||||||||||||||    
T  1188601 atcaaaattgtacatcaccaaatct 1188577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 632
Target Start/End: Complemental strand, 20156444 - 20156343
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| ||||||||||| |||||||  |||||||||||||||| | |||| ||||||||||||||||   ||||||||||  |||||||||||||||    
T  20156444 ttaaaatcctaaaagtcattaaaatcttacataatcttttaaaatctactagactttttcatacaaaaatagtcttttaaaatcctaatccaatacaccc 20156345  T
Q  631 cc 632  Q
    ||    
T  20156344 cc 20156343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 531 - 631
Target Start/End: Complemental strand, 34027617 - 34027517
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||| || |||| ||||||||||||||||   ||||||||||  ||||| |||||||||    
T  34027617 ttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaattcactagattttttcatacaaaaataatcttttaaaatcctaatcaaatacaccc 34027518  T
Q  631 c 631  Q
    |    
T  34027517 c 34027517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 529 - 627
Target Start/End: Complemental strand, 17881644 - 17881547
Alignment:
Q  529 aattaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaataca 627  Q
    |||||||||||||||| |  || |||||||| ||||||||||||||| || |||| |||||||| |||||||   ||||||||||  ||||||||||||    
T  17881644 aattaaaatcttaaaaattgttaaaatcttgcataatcttttaaaatacactagactttttcat-caaaaatgatcttttaaaatcctaatccaataca 17881547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 34027725 - 34027662
Alignment:
Q  425 cataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagtctt 489  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||| | |||||||||||||||||    
T  34027725 cataagcatctaggaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtctt 34027662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 632
Target Start/End: Complemental strand, 22551474 - 22551373
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | |||||||| ||||||||||||||||    
T  22551474 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcttaatccaatacaccc 22551375  T
Q  631 cc 632  Q
    ||    
T  22551374 cc 22551373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 632
Target Start/End: Original strand, 44766452 - 44766553
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | |||||||||||||||   ||| ||||| | |||||||||  ||||||||||  |||| ||||||||||    
T  44766452 ttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaatcctaattcaatacaccc 44766551  T
Q  631 cc 632  Q
    ||    
T  44766552 cc 44766553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 631
Target Start/End: Complemental strand, 11997294 - 11997194
Alignment:
Q  530 attaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacacc 629  Q
    ||||||||| | ||||||||| ||||| || | | ||||||||||||| ||| || |||| | |||||||||  | ||||||||  ||||||||||||||    
T  11997294 attaaaatcatgaaagtcattaaaatcatgcaaagtcttttaaaatcc-ttaaaactttttaaacaaaaattatcctttaaaatcataatccaatacacc 11997196  T
Q  630 cc 631  Q
    ||    
T  11997195 cc 11997194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 20156562 - 20156502
Alignment:
Q  425 cataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagt 486  Q
    ||||||||| || || ||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  20156562 cataagcatgtatgaaaaacacaattaacttcttgatat-aatctatcgaaatcttgatagt 20156502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 531 - 636
Target Start/End: Complemental strand, 1923196 - 1923091
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||   ||||||||||  |||||||||||||||    
T  1923196 ttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaatccactagactttttcatacaaaaatagtcttttaaaatcctaatccaatacaccc 1923097  T
Q  631 ccctta 636  Q
    ||||||    
T  1923096 ccctta 1923091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 531 - 625
Target Start/End: Original strand, 42658583 - 42658677
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaata 625  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||| |||| |||||||| ||||||||  ||||||||||  ||||||||||    
T  42658583 ttaaaatcttaaaagtcattgaaatcttgcatagtcttttaaaatccactagactttttcatgcaaaaattgtcttttaaaatcctaatccaata 42658677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 592
Target Start/End: Original strand, 27199073 - 27199134
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcat 592  Q
    |||||||||||||||||||| |||||||| ||| ||||| |||||||| |||| ||||||||    
T  27199073 ttaaaatcttaaaagtcattaaaatcttgcatagtctttcaaaatccactagactttttcat 27199134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 639
Target Start/End: Original strand, 956066 - 956174
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  ||||| || | | |||||||||||||   ||| ||||| | |||||||||  ||||||||||| |||||||||||||||    
T  956066 ttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaattctaatccaatacaccc 956165  T
Q  631 cccttagat 639  Q
     ||||||||    
T  956166 tccttagat 956174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 1923314 - 1923251
Alignment:
Q  425 cataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagtctt 489  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||| | |||||||||||||||||    
T  1923314 cataagcatctaggaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtctt 1923251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 636
Target Start/End: Complemental strand, 6303875 - 6303770
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  6303875 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 6303776  T
Q  631 ccctta 636  Q
    ||||||    
T  6303775 ccctta 6303770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 636
Target Start/End: Complemental strand, 19451381 - 19451276
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  19451381 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaatcataatccaatacaccc 19451282  T
Q  631 ccctta 636  Q
    ||||||    
T  19451281 ccctta 19451276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 531 - 631
Target Start/End: Original strand, 19350242 - 19350342
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||||||||| ||||| |||| ||| ||| |||||||||| | |  ||| || ||||| |||||| || ||||||||||  ||||| |||||||||    
T  19350242 ttaaaatcttaaaaatcattaaaattttgaatagtcttttaaaacctacaagatttattcatgcaaaaaatttcttttaaaatcctaatctaatacaccc 19350341  T
Q  631 c 631  Q
    |    
T  19350342 c 19350342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 531 - 636
Target Start/End: Original strand, 30878784 - 30878889
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| ||||||||||| |||||||| |||||||||||| ||||| |||| ||||||||||||||||   ||||||||||| ||||| |||||||||    
T  30878784 ttaaaatcctaaaagtcattaaaatcttgcataatcttttaatatccactagactttttcatacaaaaatagtcttttaaaattctaatcaaatacaccc 30878883  T
Q  631 ccctta 636  Q
    ||||||    
T  30878884 ccctta 30878889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 631
Target Start/End: Original strand, 23929309 - 23929409
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||||||||||| ||| |||||||  | | ||||||||||| ||   || ||||| |||||||||||  ||||||||||  |||||||||||||||    
T  23929309 ttaaaatcttaaaagttattaaaatctttcaaagtcttttaaaattcacaggacttttttatacaaaaattgtcttttaaaatcctaatccaatacaccc 23929408  T
Q  631 c 631  Q
    |    
T  23929409 c 23929409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 614
Target Start/End: Complemental strand, 8634785 - 8634702
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaatt 614  Q
    ||||||||||||||||||||||||||||  | | ||||||||||| ||  ||| ||||| ||| ||||| || |||||||||||    
T  8634785 ttaaaatcttaaaagtcattcaaatctttcaaagtcttttaaaattcacaagacttttttatagaaaaaatttcttttaaaatt 8634702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 636
Target Start/End: Complemental strand, 6197040 - 6196935
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  6197040 ttaaaatcatcaaagtcatcaaaatcttggaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 6196941  T
Q  631 ccctta 636  Q
    ||||||    
T  6196940 ccctta 6196935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 30878666 - 30878729
Alignment:
Q  425 cataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagtctt 489  Q
    ||||||||| || || ||||||||||||||| ||||||| ||||| | |||||||||||||||||    
T  30878666 cataagcatttaggaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtctt 30878729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 634
Target Start/End: Complemental strand, 2300249 - 2300146
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  2300249 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 2300150  T
Q  631 ccct 634  Q
    ||||    
T  2300149 ccct 2300146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 632
Target Start/End: Complemental strand, 28099784 - 28099683
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||  ||||||||||| |||||||| |||||||||||||||  |||||| |||||||||||||||||  ||||||||||  |||| ||||||||||    
T  28099784 ttaaaattctaaaagtcattaaaatcttgcataatcttttaaaatttattagactttttcatacaaaaattgtcttttaaaatcctaattcaatacaccc 28099685  T
Q  631 cc 632  Q
    ||    
T  28099684 cc 28099683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 531 - 627
Target Start/End: Complemental strand, 7853909 - 7853813
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaataca 627  Q
    |||||||||||||||||||| |||| ||| ||| ||||||||||| || |||| |||||||| | ||||||  |||||||||| |||||||||||||    
T  7853909 ttaaaatcttaaaagtcattaaaattttgcatattcttttaaaattcactagattttttcatgctaaaattgtcttttaaaatattaatccaataca 7853813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 531 - 633
Target Start/End: Complemental strand, 37369531 - 37369430
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||||||||||||||| |||||||| ||| |||||||||||||| |||| ||||||||   ||||||   |||||||||  |||||||||||||||    
T  37369531 ttaaaatcttaaaagtcattaaaatcttgcatagtcttttaaaatccactagactttttcat-gtaaaattgttttttaaaatcctaatccaatacaccc 37369433  T
Q  631 ccc 633  Q
    |||    
T  37369432 ccc 37369430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 625
Target Start/End: Complemental strand, 24887423 - 24887330
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaata 625  Q
    |||||||||||||||||||| |||||||  ||| |||||||||||| | || | |||||||||  ||||||  ||||||||||| ||||||||||    
T  24887423 ttaaaatcttaaaagtcattaaaatcttacatagtcttttaaaatctactaaactttttcata-taaaattatcttttaaaattctaatccaata 24887330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 178 - 221
Target Start/End: Original strand, 41762432 - 41762475
Alignment:
Q  178 atgttagtggattgtgaggcttcctataatttcattcttgtaaa 221  Q
    ||||| |||||||||||||||||||||||||||||||| |||||    
T  41762432 atgttggtggattgtgaggcttcctataatttcattctcgtaaa 41762475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 632
Target Start/End: Original strand, 5104936 - 5105037
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattaga-atttttcatacaaaaatttccttttaaaattttaatccaatacacc 629  Q
    |||||||||||||||||||| |||||||  | | ||||||||||||||  |||  ||||| |||| ||||||  ||||||||||  ||||||||||||||    
T  5104936 ttaaaatcttaaaagtcattaaaatctttcaaagtcttttaaaatccacaagactttttttatac-aaaattgtcttttaaaatcctaatccaatacacc 5105034  T
Q  630 ccc 632  Q
    |||    
T  5105035 ccc 5105037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 637
Target Start/End: Original strand, 22202641 - 22202747
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| || || | |||||||||  | ||||||||  |||||||||||||||    
T  22202641 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttctttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 22202740  T
Q  631 cccttag 637  Q
    |||||||    
T  22202741 cccttag 22202747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 530 - 632
Target Start/End: Original strand, 42721942 - 42722043
Alignment:
Q  530 attaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacacc 629  Q
    ||||||||| | ||||||||| ||||| || | | ||||||||||||| | ||| ||||| |   |||||| |||||| ||||| |||||||||||||||    
T  42721942 attaaaatcatgaaagtcattaaaatcatgcaaagtcttttaaaatccttaagactttttaaataaaaaatgtccttt-aaaatcttaatccaatacacc 42722040  T
Q  630 ccc 632  Q
    |||    
T  42722041 ccc 42722043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 631
Target Start/End: Original strand, 25446648 - 25446749
Alignment:
Q  530 attaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacacc 629  Q
    ||||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  ||||||||||||||    
T  25446648 attaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacacc 25446747  T
Q  630 cc 631  Q
    ||    
T  25446748 cc 25446749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 531 - 631
Target Start/End: Complemental strand, 10963 - 10863
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| |||||||||||  ||||||| |||||||||| ||||||| |||| ||||||||| |||||||  ||||||||||  |||||||||||||||    
T  10963 ttaaaatcctaaaagtcattacaatcttgcataatctttttaaatccactagactttttcatataaaaattgtcttttaaaatcctaatccaatacaccc 10864  T
Q  631 c 631  Q
    |    
T  10863 c 10863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Complemental strand, 11453 - 11416
Alignment:
Q  178 atgttagtggattgtgaggcttcctataatttcattct 215  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  11453 atgttggtggattgtgaggcttcctgtaatttcattct 11416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 531 - 631
Target Start/End: Original strand, 3635122 - 3635222
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| |||||||||||  ||||||| |||||||||| ||||||| |||| ||||||||| |||||||  ||||||||||  |||||||||||||||    
T  3635122 ttaaaatcctaaaagtcattacaatcttgcataatctttttaaatccactagactttttcatataaaaattgtcttttaaaatcctaatccaatacaccc 3635221  T
Q  631 c 631  Q
    |    
T  3635222 c 3635222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 531 - 632
Target Start/End: Original strand, 40098472 - 40098572
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||| || | || ||||||||||||||||   ||||||||||  ||||| |||||||||    
T  40098472 ttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaattcact-gactttttcatacaaaaataatcttttaaaatcctaatcaaatacaccc 40098570  T
Q  631 cc 632  Q
    ||    
T  40098571 cc 40098572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 531 - 632
Target Start/End: Complemental strand, 48152432 - 48152332
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||||||||||| ||| |||||||| |||||| |||||||||||  | || ||||||| ||||| ||  |||| ||||| | ||||||||||||||    
T  48152432 ttaaaatcttaaaagtaattaaaatcttgcataatcatttaaaatcca-caaaaattttcatgcaaaagttgtctttcaaaatctcaatccaatacaccc 48152334  T
Q  631 cc 632  Q
    ||    
T  48152333 cc 48152332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 626
Target Start/End: Complemental strand, 9824776 - 9824683
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatac 626  Q
    |||||||||||||| ||||| |||||||  ||| ||||||||||| || || | ||||||||| |||||||   |||||||||| |||||||||||    
T  9824776 ttaaaatcttaaaactcattgaaatcttacatattcttttaaaattcactaaactttttcatataaaaatt--attttaaaattctaatccaatac 9824683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 626
Target Start/End: Complemental strand, 10726701 - 10726608
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatac 626  Q
    |||||||||||||| ||||| |||||||  ||| ||||||||||| || || | ||||||||| |||||||   |||||||||| |||||||||||    
T  10726701 ttaaaatcttaaaactcattgaaatcttacatattcttttaaaattcactaaactttttcatataaaaatt--attttaaaattctaatccaatac 10726608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 425 - 489
Target Start/End: Original strand, 40098364 - 40098427
Alignment:
Q  425 cataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagtctt 489  Q
    |||||||||||| || ||||||||||||||| ||||||| ||||| | |||||||||||||||||    
T  40098364 cataagcatctatgaaaaacacaattaacttcttgatat-aatccattgaaatcttgatagtctt 40098427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 48999535 - 48999591
Alignment:
Q  425 cataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttg 481  Q
    |||||||| ||| || |||||||||||| || ||||||||||||||| |||||||||    
T  48999535 cataagcacctaggaaaaacacaattaaattattgatataaatcctttgaaatcttg 48999591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 634
Target Start/End: Complemental strand, 44343101 - 44342998
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  44343101 ttaaaatcatcaaagtcatgaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 44343002  T
Q  631 ccct 634  Q
    ||||    
T  44343001 ccct 44342998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 634
Target Start/End: Original strand, 47879698 - 47879801
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  ||||| || | | |||||||||||||   ||| ||||| | |||||||||  ||||||||||  |||||||||||||||    
T  47879698 ttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaatacaccc 47879797  T
Q  631 ccct 634  Q
    ||||    
T  47879798 ccct 47879801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 634
Target Start/End: Original strand, 47914776 - 47914879
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  ||||| || | | |||||||||||||   ||| ||||| | |||||||||  ||||||||||  |||||||||||||||    
T  47914776 ttaaaatcatcaaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaatacaccc 47914875  T
Q  631 ccct 634  Q
    ||||    
T  47914876 ccct 47914879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 9825017 - 9824971
Alignment:
Q  265 ttttgttaagatgactttatgtatagaaccatttttaatatgtaata 311  Q
    |||| |||||| |||| ||||||||||||||||||||||||| ||||    
T  9825017 tttttttaagaagactctatgtatagaaccatttttaatatgcaata 9824971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 265 - 311
Target Start/End: Complemental strand, 10726942 - 10726896
Alignment:
Q  265 ttttgttaagatgactttatgtatagaaccatttttaatatgtaata 311  Q
    |||| |||||| |||| ||||||||||||||||||||||||| ||||    
T  10726942 tttttttaagaagactctatgtatagaaccatttttaatatgcaata 10726896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 3634632 - 3634669
Alignment:
Q  178 atgttagtggattgtgaggcttcctataatttcattct 215  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  3634632 atgttggtggattgtgaggcttcctgtaatttcattct 3634669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 632
Target Start/End: Original strand, 12893954 - 12894055
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  12893954 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 12894053  T
Q  631 cc 632  Q
    ||    
T  12894054 cc 12894055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 531 - 632
Target Start/End: Original strand, 46749965 - 46750065
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| ||||||||||| |||||||  |||||||||||||||||| | || |||||||| ||||||||  ||||||||||  |||||||||||||||    
T  46749965 ttaaaatcgtaaaagtcattaaaatcttcaataatcttttaaaatccactggactttttcat-caaaaattgtcttttaaaatcgtaatccaatacaccc 46750063  T
Q  631 cc 632  Q
    ||    
T  46750064 cc 46750065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 531 - 634
Target Start/End: Original strand, 7319075 - 7319177
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||||||||||||||| |||||||  | | ||||||||||||||  ||| ||||| |||| ||||||  ||||||||||  |||||||||||||||    
T  7319075 ttaaaatcttaaaagtcattaaaatctttcaaagtcttttaaaatccacaagatttttttatac-aaaattgtcttttaaaatcctaatccaatacaccc 7319173  T
Q  631 ccct 634  Q
    ||||    
T  7319174 ccct 7319177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 10055473 - 10055369
Alignment:
Q  207 tttcattcttgtaaattttttagttattggttcaatttattagttctaattcaaacta---ttttgttaagatgactttatgtatagaaccatttttaat 303  Q
    ||||||||| ||||| |||| || |||| ||||||||||||||||||  |||||||||   || | ||||||||||| | ||| || |||||||||||||    
T  10055473 tttcattctcgtaaaatttt-agctatttgttcaatttattagttctgtttcaaactaattttcttttaagatgactctgtgtctaaaaccatttttaat 10055375  T
Q  304 atgtaa 309  Q
    ||||||    
T  10055374 atgtaa 10055369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 531 - 637
Target Start/End: Complemental strand, 3999248 - 3999142
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  3999248 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 3999149  T
Q  631 cccttag 637  Q
    |||||||    
T  3999148 cccttag 3999142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 427 - 487
Target Start/End: Original strand, 46749846 - 46749906
Alignment:
Q  427 taagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagtc 487  Q
    |||||||||| || ||| ||||||||||| ||||||||||||| | |||||||||| ||||    
T  46749846 taagcatctaggaaaaatacaattaacttcttgatataaatccattgaaatcttgaaagtc 46749906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 531 - 634
Target Start/End: Complemental strand, 995583 - 995480
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  995583 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 995484  T
Q  631 ccct 634  Q
    ||||    
T  995483 ccct 995480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 10104351 - 10104247
Alignment:
Q  207 tttcattcttgtaaattttttagttattggttcaatttattagttctaattcaaacta---ttttgttaagatgactttatgtatagaaccatttttaat 303  Q
    ||||||||| ||||| |||| || |||| ||||||||||||||||||  |||||||||   || | ||| ||||||| | ||| || |||||||||||||    
T  10104351 tttcattctcgtaaaatttt-agctatttgttcaatttattagttctgtttcaaactaattttcttttaggatgactctgtgtctaaaaccatttttaat 10104253  T
Q  304 atgtaa 309  Q
    ||||||    
T  10104252 atgtaa 10104247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 636
Target Start/End: Complemental strand, 10138790 - 10138719
Alignment:
Q  565 tcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacacccccctta 636  Q
    ||||||||||||| | ||||||||| | |||||||||  | ||||||||  ||||||||||||||| |||||    
T  10138790 tcttttaaaatccttaagaattttttaaacaaaaattgtcctttaaaatcctaatccaatacaccctcctta 10138719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 10215223 - 10215119
Alignment:
Q  207 tttcattcttgtaaattttttagttattggttcaatttattagttctaattcaaacta---ttttgttaagatgactttatgtatagaaccatttttaat 303  Q
    ||||||||| ||||| |||| || |||| ||||||||||||||||||  |||||||||   || | ||| ||||||| | ||| || |||||||||||||    
T  10215223 tttcattctcgtaaaatttt-agctatttgttcaatttattagttctgtttcaaactaattttcttttaggatgactctttgtctaaaaccatttttaat 10215125  T
Q  304 atgtaa 309  Q
    ||||||    
T  10215124 atgtaa 10215119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 635
Target Start/End: Original strand, 12104053 - 12104158
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaa-tttttcatacaaaaatttccttttaaaattttaatccaatacacc 629  Q
    |||||||| | ||||||||| ||||| | || ||||||||||||||  | |||| ||||| |  ||||||||| | | |||||||||||||||||| ||     
T  12104053 ttaaaatcatgaaagtcattaaaatcctataaaatcttttaaaatctttgagaatttttttaagcaaaaattttcctctaaaattttaatccaatagaca 12104152  T
Q  630 cccctt 635  Q
    ||||||    
T  12104153 cccctt 12104158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 535 - 613
Target Start/End: Original strand, 2004469 - 2004547
Alignment:
Q  535 aatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaat 613  Q
    |||||||||||||||| |||| |||| || |||||||||||||| |||| |||||||| |||| |||| ||||||||||    
T  2004469 aatcttaaaagtcattaaaattttgtgtagtcttttaaaatccactagactttttcattcaaatattttcttttaaaat 2004547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 531 - 641
Target Start/End: Complemental strand, 30582093 - 30581984
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    ||||| |||||||| ||| | ||||  |||||| ||||||||||||||  ||| |||||||||||||||||  ||||| ||||| |||| ||||||||||    
T  30582093 ttaaagtcttaaaaatcactaaaattatgtatagtcttttaaaatccacaagactttttcatacaaaaattgtctttt-aaattctaattcaatacaccc 30581995  T
Q  631 cccttagattt 641  Q
     ||||||||||    
T  30581994 tccttagattt 30581984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 531 - 638
Target Start/End: Original strand, 21147726 - 21147833
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | |||||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  21147726 ttaaaatcatcaaagtcatcaaaatcttggaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 21147825  T
Q  631 cccttaga 638  Q
    ||||||||    
T  21147826 cccttaga 21147833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 613
Target Start/End: Complemental strand, 9840075 - 9839993
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaat 613  Q
    ||||||||||||||||||||||||||||  | | | ||||||||||||  ||| ||||| |||||||||||  ||||||||||    
T  9840075 ttaaaatcttaaaagtcattcaaatctttcaaagttttttaaaatccacaagacttttttatacaaaaattgtcttttaaaat 9839993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 40059537 - 40059490
Alignment:
Q  173 gaatgatgttagtggattgtgaggcttcctataatttcattcttgtaa 220  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  40059537 gaataatgttggtggattgtgaggcttcctataatttcattctcgtaa 40059490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 9688592 - 9688526
Alignment:
Q  423 cacataagcatctaagataaacacaattaactttttgatataaatccttcgaaatcttgatagtctt 489  Q
    |||||||||||||| || ||| ||||||  ||| ||| ||||||||||| |||||||||||||||||    
T  9688592 cacataagcatctaggaaaaatacaattgccttcttgttataaatcctttgaaatcttgatagtctt 9688526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 576
Target Start/End: Original strand, 2003378 - 2003419
Alignment:
Q  535 aatcttaaaagtcattcaaatcttgtataatcttttaaaatc 576  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  2003378 aatcttaaaagtcattaaaatcttgtatagtcttttaaaatc 2003419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 28593215 - 28593167
Alignment:
Q  441 aaacacaattaactttttgatataaatccttcgaaatcttgatagtctt 489  Q
    |||||||||| |||| ||||||||||||||| |||||| ||||||||||    
T  28593215 aaacacaattgacttgttgatataaatcctttgaaatcctgatagtctt 28593167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 604 - 639
Target Start/End: Original strand, 39853419 - 39853454
Alignment:
Q  604 cttttaaaattttaatccaatacaccccccttagat 639  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39853419 cttttaaaattctaatccaatacaccccccttagat 39853454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 628
Target Start/End: Complemental strand, 9688469 - 9688372
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacac 628  Q
    |||||||||||||||||||   ||||||  | |||||||||||||||| || | ||||||||  |||||||  ||| |||| |  |||||||||||||    
T  9688469 ttaaaatcttaaaagtcatgacaatcttacaaaatcttttaaaatccactaaactttttcatgtaaaaattgtcttctaaattcctaatccaatacac 9688372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 531 - 634
Target Start/End: Complemental strand, 10391794 - 10391691
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||| |||||||||||||||    
T  10391794 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaattctaatccaatacaccc 10391695  T
Q  631 ccct 634  Q
    ||||    
T  10391694 ccct 10391691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 629
Target Start/End: Complemental strand, 24501422 - 24501324
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacacc 629  Q
    |||||||| | ||||||||  |||||||| | |||||||||||||||   ||| ||||| | |||||||||  | ||||||||  ||||||||||||||    
T  24501422 ttaaaatcatcaaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagatttttttaaacaaaaattgtcctttaaaatcctaatccaatacacc 24501324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 632
Target Start/End: Original strand, 33850940 - 33851041
Alignment:
Q  531 ttaaaatcttaaaagtcattcaaatcttgtataatcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccc 630  Q
    |||||||| | ||||||||  |||||||| | | |||||||||||||   ||| ||||| | |||||||||  | ||||||||  |||||||||||||||    
T  33850940 ttaaaatcatcaaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaatacaccc 33851039  T
Q  631 cc 632  Q
    ||    
T  33851040 cc 33851041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 642
Target Start/End: Original strand, 37915547 - 37915624
Alignment:
Q  565 tcttttaaaatccattagaatttttcatacaaaaatttccttttaaaattttaatccaatacaccccccttagatttt 642  Q
    |||||||||||||  |||||||||| | |||||||||  | ||||||||  |||||||||| |||| ||| |||||||    
T  37915547 tcttttaaaatcctctagaattttttaaacaaaaattgtcatttaaaatcctaatccaatataccctcctaagatttt 37915624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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