View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842-Insertion-5 (Length: 267)
Name: NF4842-Insertion-5
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 49179195 - 49179441
Alignment:
| Q |
21 |
tgatatataatgagttgaggttgagtttcatttttattttaattgtagatgaggagcaggcttcctgatccggaaatcaattcctataacacacgctctc |
120 |
Q |
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| T |
49179195 |
tgatatataatgagtcgatgttgagtttcatttttattttaattgtagatgagaagcaggcttcctgatccggagatcaattcctataacatactctctc |
49179294 |
T |
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| Q |
121 |
ctatatttcgaaacctaatcctccttcaatcatgcatgtataattttcatcactgggatcatgtaatggaagtgcttcagcattgccctaagattcaagt |
220 |
Q |
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| T |
49179295 |
ctatatttcgaaacctaatcctccttcaattatgcatgtataactttcatcactgggatcatgtaatggaagtgcttcagcattgccctaatattcaagt |
49179394 |
T |
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| Q |
221 |
tctcagaattagtaaggtttcttatgtttgtggattgtttttgttcc |
267 |
Q |
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| T |
49179395 |
tctcagaattaataaggtttcttatgtttgtggattgtttttgttcc |
49179441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 74 - 267
Target Start/End: Complemental strand, 49170878 - 49170685
Alignment:
| Q |
74 |
gagcaggcttcctgatccggaaatcaattcctataacacacgctctcctatatttcgaaacctaatcctccttcaatcatgcatgtataattttcatcac |
173 |
Q |
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| T |
49170878 |
gagcaggcttactgatccagagatcaatttctataacagaggctctcctatatttcgagacttaatcaaccttcaattaagcatgttttactttcaccat |
49170779 |
T |
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| Q |
174 |
tgggatcatgtaatggaagtgcttcagcattgccctaagattcaagttctcagaattagtaaggtttcttatgtttgtggattgtttttgttcc |
267 |
Q |
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| T |
49170778 |
tgggatcatgtaatggaagtgcttcagcattgccccaagcttcaaattcttcttattctgaaggtttcttatgtttgtggattgtttttgttcc |
49170685 |
T |
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