View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842-Insertion-6 (Length: 144)
Name: NF4842-Insertion-6
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 5e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 5e-57
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 29783028 - 29782893
Alignment:
| Q |
7 |
aaattggtgattaaatgatacatagttaacaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatgctttctatatcgatgttaa |
106 |
Q |
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| T |
29783028 |
aaattggtgattaaatgatacatagttaataaatcattagaacttacggtcattagaaatgccaacaccacctgtgccatgctttctatatcgatgttaa |
29782929 |
T |
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| Q |
107 |
tgcgttggcttgcacatttcttaccttttgtatcca |
142 |
Q |
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| T |
29782928 |
tgcctcggcttgcacatttcttaccttttgtatcca |
29782893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 508401 - 508536
Alignment:
| Q |
7 |
aaattggtgattaaatgatacatagttaacaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatgctttctatatcgatgttaa |
106 |
Q |
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| T |
508401 |
aaattggtgagtaaacgatacatagttaataaatcattagaacttagggtcattaaaaatgccaacaccacatgtgccatgctttctatatcgatgttaa |
508500 |
T |
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| Q |
107 |
tgcgttggcttgcacatttcttaccttttgtatcca |
142 |
Q |
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| T |
508501 |
tgcatcgacttgcacatttcttaccttttgtatcca |
508536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 35577491 - 35577625
Alignment:
| Q |
7 |
aaattggtgattaaatgatacatagttaacaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatgctttctatatcgatgttaa |
106 |
Q |
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| T |
35577491 |
aaattggtgagtaaacgatacatagttaataaatcattagaacttagggtcattagaaatgccaacaccacctgtgcgatgctttctatatcgatgttaa |
35577590 |
T |
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| Q |
107 |
tgcgttggcttgcacatttcttaccttttgtatcc |
141 |
Q |
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| T |
35577591 |
tgcatcgacttgcacatttcttaccttttgtatcc |
35577625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 3e-49
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 44921918 - 44922052
Alignment:
| Q |
7 |
aaattggtgattaaatgatacatagttaacaaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatgctttctatatcgatgttaa |
106 |
Q |
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| T |
44921918 |
aaattggtgagtaaacgatacatagttaataaatcattagaacttagggtcattagaaatgccaacaccacctgtgcgatgctttctatatcgatgttaa |
44922017 |
T |
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| Q |
107 |
tgcgttggcttgcacatttcttaccttttgtatcc |
141 |
Q |
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| T |
44922018 |
tgcatcgacttgcacatttcttaccttttgtatcc |
44922052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 33009 - 32923
Alignment:
| Q |
56 |
tcattagaaatgtcaacaccaccagtgccatgctttctatatcgatgttaatgcgttggcttgcacatttcttaccttttgtatcca |
142 |
Q |
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| T |
33009 |
tcattggaaatgccaacaccaccagtgtcatgctttctatatcgatgttaatgcgtcggcttgcacatttcttaccttttgtatcca |
32923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 3e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 46122867 - 46122762
Alignment:
| Q |
37 |
aaatcattagaacttagggtcattagaaatgtcaacaccaccagtgccatgctttctatatcgatgttaatgcgttggcttgcacatttcttaccttttg |
136 |
Q |
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| T |
46122867 |
aaatcattagaacttagggtcattagaaatgccaacaccaccagtgccatgctttctatatcgatgttaatgcgtcggcttgcacattttttaccttttg |
46122768 |
T |
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| Q |
137 |
tatcca |
142 |
Q |
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| T |
46122767 |
tatcca |
46122762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 46122927 - 46122884
Alignment:
| Q |
7 |
aaattggtgattaaatgatacatagttaacaaatcattagaactt |
51 |
Q |
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| T |
46122927 |
aaattggtgattaaatgatacat-gttaataaatcattagaactt |
46122884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 45 - 142
Target Start/End: Complemental strand, 1414092 - 1414003
Alignment:
| Q |
45 |
agaacttagggtcattagaaatgtcaacaccaccagtgccatgctttctatatcgatgttaatgcgttggcttgcacatttcttaccttttgtatcca |
142 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||| |
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| T |
1414092 |
agaacttagggtcattagaaatgccaacaccaccagtgcc--------tatatcgatgttaatgcgtcggctttcatatttcttaccttttgtatcca |
1414003 |
T |
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