View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842-Insertion-8 (Length: 406)
Name: NF4842-Insertion-8
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 35 - 406
Target Start/End: Complemental strand, 37195028 - 37194666
Alignment:
| Q |
35 |
ttaaggttgtggataatagacatggacatcgacatagtggaaagtttaaggtgtagannnnnnn-aatgtttgcagtgataactaattatggcgcgattt |
133 |
Q |
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| T |
37195028 |
ttaaggttgtggataatagacatggacatcgacatagtggaaagtttaaggtgtagattttttttaatgtttgcagtgataactaataatggcgcgattt |
37194929 |
T |
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| Q |
134 |
taattattttaggtagtgtaatcgagcgttgattcagagaacatgcatactctctatatat---ccgttggtaggacaatacattgatttagaataatgc |
230 |
Q |
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| T |
37194928 |
taattattttaggtagtgtaatcgagcgttgatttagagaacatgtctcctgtatatctgtttatagttggtaggacaatgcattgatttagaataatgc |
37194829 |
T |
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| Q |
231 |
attgttatatgcagggtcggggttcgatctcataataccatatttattcatcttataaagtgaattttagccactacgctgtttgacccnnnnnnnnnnn |
330 |
Q |
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| T |
37194828 |
attcttatcggcagggtcggggttcgatctcagaatatcctatttattcacc--------tgaattttagcaactacgctgtttgaccc-----aaaaaa |
37194742 |
T |
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| Q |
331 |
nnnnggtgagaatatcttcagcttagatagattttgggagactgaagttaagtcagatccgtcaacattttacgag |
406 |
Q |
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| T |
37194741 |
aagaggtgagaatatcttcgacttagatagattttgcgagacttaagttaagtcgggtccgtcaacattttacgag |
37194666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 306
Target Start/End: Original strand, 22043097 - 22043131
Alignment:
| Q |
272 |
atttattcatcttataaagtgaattttagccacta |
306 |
Q |
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| T |
22043097 |
atttattcatcttataaagtgaattttagccacta |
22043131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 27907917 - 27907885
Alignment:
| Q |
274 |
ttattcatcttataaagtgaattttagccacta |
306 |
Q |
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| T |
27907917 |
ttattcatcttataaggtgaattttagccacta |
27907885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 42553209 - 42553179
Alignment:
| Q |
227 |
atgcattgttatatgcagggtcggggttcga |
257 |
Q |
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| T |
42553209 |
atgcattgttatatgcagggtcggggttcga |
42553179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 6652235 - 6652315
Alignment:
| Q |
226 |
aatgcattgttatatgcagggtcggggttcgatctcataataccatatttattcatcttataaagtgaattttagccacta |
306 |
Q |
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| T |
6652235 |
aatgcattattttatgcagggttagggttcgaactccagacaccccatttattcaccttataaagtgaattatagccacta |
6652315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 306
Target Start/End: Original strand, 34365809 - 34365841
Alignment:
| Q |
274 |
ttattcatcttataaagtgaattttagccacta |
306 |
Q |
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| T |
34365809 |
ttattcatcttataaagtgaattctagccacta |
34365841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 21476102 - 21476070
Alignment:
| Q |
274 |
ttattcatcttataaagtgaattttagccacta |
306 |
Q |
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| T |
21476102 |
ttattcatcttataaagtgaattctagccacta |
21476070 |
T |
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