View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842_high_5 (Length: 336)
Name: NF4842_high_5
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 35786791 - 35786484
Alignment:
| Q |
11 |
catcatcaccaaccagttttctataataacaataatggtttagttcattttcatcataaccctcatcaagaaatggtgcaagtgcaagtgcaacaccatc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35786791 |
catcatcaccaaccagttttctataataacaataatggtttagttcattttcatcataaccctcatcaagaaatggtgcaagtgcaagtgcaacagcatc |
35786692 |
T |
|
| Q |
111 |
aacaatatcatcatcaacaactaaatcaagattttgaacatgcaagtggtgattctgttaaatcaattacctcgtacggtcagaatattcatagtagtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35786691 |
aacaatatcatcatcaacaactaaatcaagattttgaacatgcaagtggtgattctgttaaatcaattacttcgtacggtcagaatattcatagtagtca |
35786592 |
T |
|
| Q |
211 |
tcatcatgatcaagaacaacatgcacaaaatgttttgaatcaacaacatgcacaacatgttttgaatcagcaacaacagcagatgaatattcaaaattgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
35786591 |
tcatcatgatcaagaacaacatgcacaaaatgttttgaatcaacaacatgcacaacatgttttgaatcagcaacagcagcagatgaatattcagaattgt |
35786492 |
T |
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| Q |
311 |
gtggggtc |
318 |
Q |
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|||||||| |
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| T |
35786491 |
gtggggtc |
35786484 |
T |
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