View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842_high_6 (Length: 328)
Name: NF4842_high_6
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 44308647 - 44308946
Alignment:
| Q |
19 |
ctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtgttgttggcgacggacctactcaatgcgatagaataat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44308647 |
ctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtgttgttggtgacggacctactcaatgcgatagaataat |
44308746 |
T |
|
| Q |
119 |
ggctgatgcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttagttctcttgcatccagagccgttgataaactttaaatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44308747 |
ggctgatgcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttagttctcttgcatccagagccgttgataaactttaaatt |
44308846 |
T |
|
| Q |
219 |
gcattccttgcatggttatgttattttgggtataatcagacccaaaatgagaagaaaagtcgtttaattttagggtctccttaatttggtgtgatgatgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44308847 |
gcattccttgcatggttatgttattttgggtataatcaaacccaaaatgagaaaaaaagtcgtttaattttagggtctccttaatttggtgtgataatgt |
44308946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 44194688 - 44194942
Alignment:
| Q |
19 |
ctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtgttgttggcgacggacctactcaatgcgatagaataat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||| |||||| |||| |
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| T |
44194688 |
ctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcaaagttgctgttgatggacctactcaatgtgatagagtaat |
44194787 |
T |
|
| Q |
119 |
ggctgatgcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttagttctcttgcatccagagccgttgataaactttaaatt |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
44194788 |
ggctgatgagcatattgttaaccctgctattactgctcttaacaagcaaatcgcattccttagtgaacttgcatccaaagccgttgataaactttaaatt |
44194887 |
T |
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| Q |
219 |
gcattccttgcatggttatgttattttgggtataatcagacccaaaatgagaagaa |
274 |
Q |
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|||||||||| |||||| |||||||||||||||| | | ||||||||||||||||| |
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| T |
44194888 |
gcattccttgtatggttgtgttattttgggtatactta-acccaaaatgagaagaa |
44194942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 274
Target Start/End: Original strand, 44301122 - 44301376
Alignment:
| Q |
19 |
ctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcggtgttgttggcgacggacctactcaatgcgatagaataat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||| |||||| |||| |
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| T |
44301122 |
ctttcaaaagttgcttgggtgaaatcactgaggatcctcaaactgctagttatgattgcaaagttgctgttgatggacctactcaatgtgatagagtaat |
44301221 |
T |
|
| Q |
119 |
ggctgatgcgcatattgttaaccctgctattactgctcttaacaagcaaatcctattccttagttctcttgcatccagagccgttgataaactttaaatt |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
44301222 |
ggctgatgagcatattgttaaccctgctattactgctcttaacaagcaaatcgcattccttagtgaacttgcatccaaagccgttgataaactttaaatt |
44301321 |
T |
|
| Q |
219 |
gcattccttgcatggttatgttattttgggtataatcagacccaaaatgagaagaa |
274 |
Q |
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|||||||||| |||||| |||||||||||||||| | | ||||||||||||||||| |
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| T |
44301322 |
gcattccttgtatggttgtgttattttgggtatactta-acccaaaatgagaagaa |
44301376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 281 - 316
Target Start/End: Original strand, 44315979 - 44316014
Alignment:
| Q |
281 |
tttaattttagggtctccttaatttggtgtgatgat |
316 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
44315979 |
tttaattttagggtctacttaatttggtgtgatgat |
44316014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 44315804 - 44315854
Alignment:
| Q |
129 |
catattgttaaccctgctattactgctcttaacaagcaaatcctattcctt |
179 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||| |||||||| |
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| T |
44315804 |
catattgttaaccctgctgttactgctcttaaccgtcaaatcttattcctt |
44315854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 23696146 - 23696109
Alignment:
| Q |
281 |
tttaattttagggtctccttaatttggtgtgatgatgt |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
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| T |
23696146 |
tttaattttattgtctccttaatttggtgtgatgatgt |
23696109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 23714579 - 23714542
Alignment:
| Q |
281 |
tttaattttagggtctccttaatttggtgtgatgatgt |
318 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
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| T |
23714579 |
tttaattttattgtctccttaatttggtgtgatgatgt |
23714542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 23733035 - 23732998
Alignment:
| Q |
281 |
tttaattttagggtctccttaatttggtgtgatgatgt |
318 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
23733035 |
tttaattttattgtctccttaatttggtgtgatgatgt |
23732998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 23751490 - 23751453
Alignment:
| Q |
281 |
tttaattttagggtctccttaatttggtgtgatgatgt |
318 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
23751490 |
tttaattttattgtctccttaatttggtgtgatgatgt |
23751453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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