View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4842_low_2 (Length: 463)

Name: NF4842_low_2
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4842_low_2
NF4842_low_2
[»] chr4 (57 HSPs)
chr4 (16-453)||(27444512-27444949)
chr4 (189-453)||(27431039-27431303)
chr4 (251-453)||(27554294-27554496)
chr4 (28-449)||(27557478-27557897)
chr4 (262-453)||(27498400-27498591)
chr4 (260-453)||(27526074-27526267)
chr4 (219-453)||(27501302-27501536)
chr4 (268-453)||(27486968-27487153)
chr4 (276-453)||(27505680-27505857)
chr4 (260-453)||(27513738-27513931)
chr4 (268-445)||(27479894-27480071)
chr4 (268-453)||(27523373-27523558)
chr4 (269-453)||(27516580-27516764)
chr4 (276-453)||(27469445-27469622)
chr4 (260-453)||(27473877-27474070)
chr4 (285-453)||(17970284-17970452)
chr4 (298-453)||(27425797-27425952)
chr4 (279-453)||(27500319-27500493)
chr4 (260-453)||(27466806-27466999)
chr4 (268-453)||(27476672-27476857)
chr4 (276-427)||(27460489-27460640)
chr4 (298-453)||(27570049-27570204)
chr4 (291-445)||(27414297-27414451)
chr4 (298-411)||(27412691-27412804)
chr4 (279-411)||(27567282-27567414)
chr4 (297-411)||(27411455-27411569)
chr4 (276-370)||(27502113-27502207)
chr4 (245-453)||(27502754-27502962)
chr4 (298-453)||(27563346-27563501)
chr4 (299-445)||(27571616-27571762)
chr4 (291-453)||(27415609-27415768)
chr4 (281-445)||(27419054-27419218)
chr4 (298-453)||(27485943-27486098)
chr4 (298-453)||(27506683-27506838)
chr4 (299-453)||(27478884-27479038)
chr4 (298-396)||(27503964-27504062)
chr4 (291-453)||(27585673-27585835)
chr4 (297-445)||(27424513-27424661)
chr4 (281-445)||(27556362-27556526)
chr4 (298-453)||(27420393-27420548)
chr4 (291-445)||(27421924-27422082)
chr4 (245-342)||(27507760-27507857)
chr4 (302-378)||(27490020-27490096)
chr4 (281-445)||(27559223-27559387)
chr4 (298-396)||(27468327-27468425)
chr4 (298-396)||(27524566-27524664)
chr4 (299-396)||(27475580-27475677)
chr4 (291-396)||(27514933-27515038)
chr4 (28-100)||(27554564-27554637)
chr4 (284-407)||(27423253-27423376)
chr4 (300-453)||(27565953-27566106)
chr4 (291-328)||(27495646-27495683)
chr4 (291-328)||(27600663-27600700)
chr4 (298-453)||(27497322-27497477)
chr4 (303-394)||(27508896-27508987)
chr4 (318-453)||(27527146-27527281)
chr4 (279-335)||(27446250-27446306)
[»] chr3 (14 HSPs)
chr3 (268-453)||(38040051-38040236)
chr3 (268-453)||(38028736-38028921)
chr3 (268-453)||(38036763-38036948)
chr3 (267-453)||(50904761-50904947)
chr3 (267-453)||(38024844-38025030)
chr3 (267-453)||(38031296-38031482)
chr3 (267-443)||(55084781-55084957)
chr3 (267-453)||(50909945-50910131)
chr3 (267-453)||(38033744-38033934)
chr3 (298-445)||(38043896-38044043)
chr3 (282-453)||(48840696-48840866)
chr3 (282-453)||(50911853-50912024)
chr3 (385-445)||(50913489-50913549)
chr3 (281-328)||(38035165-38035212)
[»] chr8 (3 HSPs)
chr8 (268-453)||(21604724-21604909)
chr8 (267-453)||(21607265-21607451)
chr8 (282-373)||(21634608-21634699)
[»] chr2 (1 HSPs)
chr2 (285-453)||(3073554-3073722)
[»] chr5 (4 HSPs)
chr5 (262-453)||(1754206-1754396)
chr5 (268-433)||(1759253-1759422)
chr5 (298-453)||(1756757-1756912)
chr5 (291-407)||(1754719-1754835)


Alignment Details
Target: chr4 (Bit Score: 426; Significance: 0; HSPs: 57)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 27444512 - 27444949
Alignment:
Q  16 catatgccagacaaatatgtctctttgtattatatttctgcatttaagtttgtaatacaacttagttgaaaattttcgtaaataagtcataatctctttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444512 catatgccagacaaatatgtctctttgtattatatttctgcatataagtttgtaatacaacttagttgaaaattttcgtaaataagtcataatctctttg 27444611  T
Q  116 tccataatcatctcacccagttgtttttctatttatctttcactgtcaaaaggtagactaaaatgaaaaatatgtaagtgccttctgtacaattttgcct 215  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444612 ttcataatcatctcactcagttgtttttctatttatctttcactgtcaaaaggtagactaaaatgaaaaatatgtaagtgccttctgtacaattttgcct 27444711  T
Q  216 aaaataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444712 aaaataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagac 27444811  T
Q  316 cacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctctt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27444812 cacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctctt 27444911  T
Q  416 catttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27444912 catttcctctccaacgtatactgcaagatatccctttg 27444949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 189 - 453
Target Start/End: Original strand, 27431039 - 27431303
Alignment:
Q  189 gtaagtgccttctgtacaattttgcctaaaataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaa 288  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  27431039 gtaagtgcctgctgtacaatttttcctcaaataatctatttcagttccttcttctgaagatgttagcacagattcaaacgagaagtaatatttaagaaaa 27431138  T
Q  289 cgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaa 388  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||| ||||    
T  27431139 cgtcttctctgcaaggaattgtgagaccaccggttggatggtcatatccaaattgttcctcggcttgattcaacaattcttgaaatgacggttggttcaa 27431238  T
Q  389 gtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||    
T  27431239 gtatgatattgggatcacaaacctcttcatttcatccccaacatatactgcaatatatccctttg 27431303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 251 - 453
Target Start/End: Complemental strand, 27554496 - 27554294
Alignment:
Q  251 ttagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcg 350  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| |||||||| |||||||||||     
T  27554496 ttagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactacccgttggatgatcatatccaaattgttcctca 27554397  T
Q  351 gcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccct 450  Q
    ||||||||||  ||||||||||| |||| |||||| ||  | || ||||  |||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  27554396 gcttgattcagcaattcttgaaacgatggttggcttaacaaagaaattgatatcacaaaccgcttcatttcctctccaacatatactgcaaggtatccct 27554297  T
Q  451 ttg 453  Q
    |||    
T  27554296 ttg 27554294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 28 - 449
Target Start/End: Complemental strand, 27557897 - 27557478
Alignment:
Q  28 aaatatgtctctttgtattatatttctgcatttaagtttgtaatacaacttagttgaaaattttcgtaaataagtcataatctctttgtccataatcatc 127  Q
    |||| |||||||| ||||||||||||||||| ||| |||||||| ||| |||  ||||||||||| |||| || ||| ||||| ||||||| |||| | |    
T  27557897 aaatgtgtctcttggtattatatttctgcatataactttgtaat-caa-ttaactgaaaattttcctaaacaaatcaaaatctttttgtccctaataacc 27557800  T
Q  128 tcacccagttgtttttctatttatctttcactgtcaaaaggt-------agactaaaatgaaaaatatgtaagtgccttctgtacaattttgcctaaaat 220  Q
    |||  ||| |||||| || ||| |  || |||| ||||||||       |||||||  ||||||| | ||||  | ||||||||||| ||||||||||||    
T  27557799 tcagtcagctgttttactgttttt--ttaactgacaaaaggtggaatgtagactaa--tgaaaaacaagtaatggtcttctgtacaaatttgcctaaaat 27557704  T
Q  221 aatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccaccc 320  Q
    |||||||||||| | |||| |  |||| | | || ||  |  ||| || ||||| |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  27557703 aatctatgtcagatacttctt--gaaggtct-agaacctacacaagcgcgaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccaccc 27557607  T
Q  321 attggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcattt 420  Q
    ||||||||  ||||| | ||||||||||| ||||||||||  |||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||    
T  27557606 attggatgaacatattcaaattgttcctcagcttgattcagcaattcttgaaatgatggttggtttaagtatgacattgggatcacaaacctcttcattt 27557507  T
Q  421 cctctccaacgtatactgcaagatatccc 449  Q
    |||||||||| ||||| ||||||||||||    
T  27557506 cctctccaacatatacggcaagatatccc 27557478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 262 - 453
Target Start/End: Complemental strand, 27498591 - 27498400
Alignment:
Q  262 tcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaa 361  Q
    ||||||||||||| ||||||||||| | |||||||| ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| |||||    
T  27498591 tcaaacgagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattggatgatcatattcgaattgttcctcggcttggttcaa 27498492  T
Q  362 taattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     || ||||| || |||| |||| ||||||||||||| ||||||||||| |  ||||||||||||||||| |||||||| |||||||||||||    
T  27498491 caagtcttggaacgatggttggttcaagtatgatatagggatcacaaaacgtttcatttcctctccaacatatactgctagatatccctttg 27498400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 260 - 453
Target Start/End: Original strand, 27526074 - 27526267
Alignment:
Q  260 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattc 359  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| | ||||||||||| |||||  ||    
T  27526074 attcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccacccgttggatgatcatattcaaattgttcctcagcttggctc 27526173  T
Q  360 aataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    || |||||||| ||||| | |||| ||||||||||||  || |||||||||| |||||||| ||||||||| || ||||| |||||||||||||    
T  27526174 aacaattcttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctccaacatacactgctagatatccctttg 27526267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 219 - 453
Target Start/End: Complemental strand, 27501536 - 27501302
Alignment:
Q  219 ataatctatgtcagttccttcatctgaagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccac 318  Q
    |||||||||||||| ||||||  |  |||  ||||||||  | |||||| |||||| ||||||||||| | ||||||||| |||||||| ||||||||||    
T  27501536 ataatctatgtcagctccttctaccaaagggattagcacctactcaaacaagaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccac 27501437  T
Q  319 ccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcat 418  Q
    || ||||||| || ||| | ||||||||||||||||| ||||| || ||||||||  ||| |||| | |||||||||||||||||||||||||  |||||    
T  27501436 ccgttggatgatcgtattcaaattgttcctcggcttggttcaacaagtcttgaaacaatggttggtttaagtatgatattgggatcacaaaccgtttcat 27501337  T
Q  419 ttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||||||||| |||||||| ||| |||||||||    
T  27501336 ttcctctccaacatatactgctagacatccctttg 27501302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 268 - 453
Target Start/End: Complemental strand, 27487153 - 27486968
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    ||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||||||| |||||| | |||||||| || ||||| ||||| |||||    
T  27487153 gagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagcttggttcaacaattc 27487054  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||| |||| |||| | ||||||||||  ||||||||||||| |||||||| |||||| ||||| ||||| |||||||||||||    
T  27487053 ttgaaacgatggttggtttaagtatgataaagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttg 27486968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 276 - 453
Target Start/End: Original strand, 27505680 - 27505857
Alignment:
Q  276 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatg 375  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| |||||||| ||||    
T  27505680 atatctaagaaaatctcttctctgcaaggaatagtgagaccacccattggatggtcatattcaaattgttcctcagcttggttcaacaattcttggaatg 27505779  T
Q  376 atgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    | | |||| ||||||||||||  || |||||||||| |||||||| |||||| ||||| ||||| ||||| |||||||    
T  27505780 aggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatacccctttg 27505857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 260 - 453
Target Start/End: Original strand, 27513738 - 27513931
Alignment:
Q  260 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattc 359  Q
    |||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||| |  ||||||| || ||||| |||    
T  27513738 attcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagcttggttc 27513837  T
Q  360 aataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    || |||||||| || || | |||| ||||||||||||||||||||||||||| |||||||| |||||| || || ||||| |||||||| ||||    
T  27513838 aacaattcttggaacgaggtttggttcaagtatgatattgggatcacaaaccgcttcattttctctcctacatacactgctagatatccttttg 27513931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 268 - 445
Target Start/End: Complemental strand, 27480071 - 27479894
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||||| ||||| ||||| || |     
T  27480071 gagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaactt 27479972  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    ||| ||||||| |||| ||||||||||||  || |||||||| | |||||||| |||||| ||||||||||| |||||    
T  27479971 ttggaatgatgtttggttcaagtatgatacaggaatcacaaaacgcttcattttctctcctacgtatactgctagata 27479894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 268 - 453
Target Start/End: Original strand, 27523373 - 27523558
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    ||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||||||| | ||||||||||||||||   |||| |||||    
T  27523373 gagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccattggatggtcatattcaaattgttcctcggcttcgctcaacaattc 27523472  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||| ||||| | |||| |||| |||||||  || |||||||||| |||||||| |||||| ||||| ||||| ||||| |||||||    
T  27523473 ttggaatgaagtttggttcaaatatgatacaggaatcacaaaccgcttcattttctctcctacgtacactgctagatagccctttg 27523558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 269 - 453
Target Start/End: Original strand, 27516580 - 27516764
Alignment:
Q  269 agaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattct 368  Q
    |||||| |||||||||||||| |||||| |||||||||| |||||||| |||||||||||||||||| | ||||||||||| ||||| ||||| ||||||    
T  27516580 agaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattggatggtcatattcaaattgttcctcagcttggttcaacaattct 27516679  T
Q  369 tgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    || ||||||  |||  |||| |||||||| ||||||||||| |||||||| |||| ||| || || || || |||||||||||||    
T  27516680 tggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatgtcctttcctacatacacagctagatatccctttg 27516764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 276 - 453
Target Start/End: Complemental strand, 27469622 - 27469445
Alignment:
Q  276 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatg 375  Q
    |||||||||||||  ||||||||||||||||| || ||||||||||||||||| |||||| | |||||||| || |||||  |||| | |||||| ||||    
T  27469622 atatctaagaaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagcttggctcaacagttcttgtaatg 27469523  T
Q  376 atgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||| |||  |||| |||||||| ||||||||||||| |||||||| |||||| ||||| ||||| |||||||||||||    
T  27469522 atgtttgcttcaaatatgatatagggatcacaaaccgcttcattttctctcctacgtacactgctagatatccctttg 27469445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 260 - 453
Target Start/End: Complemental strand, 27474070 - 27473877
Alignment:
Q  260 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattc 359  Q
    |||||| |||||||| || ||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||| | |||||||||||   |||  ||    
T  27474070 attcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctc 27473971  T
Q  360 aataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |  |||||||| ||||||  |||  |||| |||||||| ||||||||||| |||||||| |||||||| ||||| || || |||||||||||||    
T  27473970 agcaattcttggaatgatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctctcctacgtacacagctagatatccctttg 27473877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 285 - 453
Target Start/End: Complemental strand, 17970452 - 17970284
Alignment:
Q  285 aaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggc 384  Q
    ||||| |||||| |||||||||||||||| |||||||||||||| || |||||||||| |||||| ||  || |||  || | ||||||||| | ||||     
T  17970452 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt 17970353  T
Q  385 tcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||||  | ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  17970352 tcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttg 17970284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 453
Target Start/End: Complemental strand, 27425952 - 27425797
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||||| ||||| |||||||| || | ||||||   |||| ||||||| ||||||||||||| |||| |||||||||||||    
T  27425952 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaaattgactcaataagtcttgaaatgatggttggttcaagtatgatat 27425853  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||||||| ||| |||   || ||||||||| ||||||||||||||||||||||    
T  27425852 tgggatcacataccgcttttgtttctctccaacatatactgcaagatatccctttg 27425797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 279 - 453
Target Start/End: Original strand, 27500319 - 27500493
Alignment:
Q  279 tctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatg 378  Q
    |||||||||| |||||||||||||||||| ||||  |||||||||||||||||||||||||| ||||| || | |||  |||  |||||||| |||||      
T  27500319 tctaagaaaaggtcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcagattggctcagcaattcttggaatgaac 27500418  T
Q  379 attggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     |||| | ||||||||||| ||||||||||| | |||||||| |||||| ||||| ||||| |||||||| ||||    
T  27500419 tttggtttaagtatgatatagggatcacaaatcgcttcattttctctcctacgtacactgctagatatccttttg 27500493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 260 - 453
Target Start/End: Complemental strand, 27466999 - 27466806
Alignment:
Q  260 attcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattc 359  Q
    |||||| | |||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||   |||  ||    
T  27466999 attcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattggatgatcatattcaaattgttcctcactttggctc 27466900  T
Q  360 aataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |  | |||||| ||| ||  |||  |||| |||||||| ||||||||||| |||||||| |||| ||| ||||| ||||| |||||||||||||    
T  27466899 agcagttcttggaataatttttgcttcaaatatgatatagggatcacaaatctcttcatctcctttcctacgtacactgctagatatccctttg 27466806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 453
Target Start/End: Complemental strand, 27476857 - 27476672
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    |||| |||||||| ||||||| |||||||||||||||||| || ||||||||||||||||| |||||| | |||||||||||   |||  |||  | |||    
T  27476857 gagaggtaatatccaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcactttggctcagcagttc 27476758  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||| ||||| | |||| ||||||||||||  || |||||||||| |||||||| ||| ||||| || ||||| |||||||||||||    
T  27476757 ttggaatgaggtttggttcaagtatgatacaggaatcacaaaccgcttcattttctcaccaacatacactgctagatatccctttg 27476672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 276 - 427
Target Start/End: Complemental strand, 27460640 - 27460489
Alignment:
Q  276 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatg 375  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||   |||  |||  |||||||| ||||    
T  27460640 atatccaagaaaatgtcttctctgcaaggaatggtgagaccacccattggatgatcatattcaaattgttcctcactttggctcagcaattcttggaatg 27460541  T
Q  376 atgattggctcaagtatgatattgggatcacaaacctcttcatttcctctcc 427  Q
    ||  |||  |||| |||||||| ||||||||||| |||||||| ||||||||    
T  27460540 atttttgcttcaaatatgatatagggatcacaaatctcttcatgtcctctcc 27460489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 27570049 - 27570204
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||| | |||||| |||||| |||  || ||||||||||| | |||||| ||||||||||     
T  27570049 tgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagcttgactcagcaagtcttgaaatgaaggttggcttaagtatgatac 27570148  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     ||||||||| ||| | ||  || ||||||||| ||||||||||||||||||||||    
T  27570149 ggggatcacataccgcgtctgtttctctccaacatatactgcaagatatccctttg 27570204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 291 - 445
Target Start/End: Original strand, 27414297 - 27414451
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagt 390  Q
    ||||| ||||| |||||||| ||||||||||||||||| |||||||| |||| ||| || | |||||| | ||||||||||||||| | |||| ||||||    
T  27414297 tcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaatgagggttggttcaagt 27414396  T
Q  391 atgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    ||||||  || ||||||||||   ||||||  ||||||||||| |||||||||||    
T  27414397 atgatacaggaatcacaaaccgtctcattttatctccaacgtagactgcaagata 27414451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 298 - 411
Target Start/End: Complemental strand, 27412804 - 27412691
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||||||||||| |||||||| || | ||| || |||||| ||||||| ||||||||| ||| |||| |||||||||||||    
T  27412804 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagcttgactcaataagtcttgaaataatggttggttcaagtatgatat 27412705  T
Q  398 tgggatcacaaacc 411  Q
    ||||||||||||||    
T  27412704 tgggatcacaaacc 27412691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 279 - 411
Target Start/End: Complemental strand, 27567414 - 27567282
Alignment:
Q  279 tctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatg 378  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||| || | |||||| | |||||||||||| ||||    
T  27567414 tctaagaaagcatcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatg 27567315  T
Q  379 attggctcaagtatgatattgggatcacaaacc 411  Q
     |||| |||||||||||| ||| ||||| ||||    
T  27567314 gttggttcaagtatgatactggaatcacgaacc 27567282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 27411455 - 27411569
Alignment:
Q  297 ctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgata 396  Q
    |||||||||||||||||||||||||| ||||| |||||||| |||| ||| || |||||||| | |||||||||||| |||| |||| ||||||||||||    
T  27411455 ctgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata 27411554  T
Q  397 ttgggatcacaaacc 411  Q
     ||| ||||| ||||    
T  27411555 ctggaatcacgaacc 27411569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 27502113 - 27502207
Alignment:
Q  276 atatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttg 370  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||||||| |||||| | ||||||||||| ||||| ||||| ||||||||    
T  27502113 atatctaagaaaatgtcttctctgcaaggaatagttagaccacccattggatgatcatattcaaattgttcctcagcttggttcaacaattcttg 27502207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 453
Target Start/End: Original strand, 27502754 - 27502962
Alignment:
Q  245 aagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgt 344  Q
    ||||| |||||||  | |||| |||||||| ||||||| |||||  ||||||   |||||||| || |||||||||||||||||||||||||| |||| |    
T  27502754 aagatgttagcacctactcaagcgagaagtgatatctacgaaaaaatcttcttcacaaggaatagtaagaccacccattggatggtcatatccaaattct 27502853  T
Q  345 tcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagat 444  Q
    ||| | |||||  |||  || ||||||||||| | |||  |||| ||||| ||||| |||||||||| |||||| | |||||| || || || |||||||    
T  27502854 tccacagcttggctcagcaagtcttgaaatgaagtttgattcaaatatgacattggaatcacaaaccgcttcatcttctctcctacataaacggcaagat 27502953  T
Q  445 atccctttg 453  Q
    |||| ||||    
T  27502954 atccttttg 27502962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 27563346 - 27563501
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||||||||| |||||||||||||| |||||||| || | ||| ||||||||| |||  || ||||||||  ||| |||| ||||||||||||     
T  27563346 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggcttgactcagcaaatcttgaaacaatgtttggttcaagtatgatac 27563445  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     ||||||||||  |||||   ||  ||||||||||| ||||||||||| |||||||    
T  27563446 ggggatcacaattctcttttgtttatctccaacgtacactgcaagatagccctttg 27563501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 445
Target Start/End: Complemental strand, 27571762 - 27571616
Alignment:
Q  299 gcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatatt 398  Q
    |||||||||||||||||||||||||||||| |||||||| |||| ||| || | |||||| | |||||||||||| ||||  |||||||| ||||||| |    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggctggctcaaatatgatact 27571663  T
Q  399 gggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    || ||||| |||| | |||||   |||||||| || ||||| |||||    
T  27571662 ggaatcacgaaccgcctcattctatctccaacatagactgcgagata 27571616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 453
Target Start/End: Complemental strand, 27415768 - 27415609
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagt 390  Q
    |||||| |||||||||| ||||| |||||||| | ||| |||||||| || | |||||| |||||| |||| || |||||||| |||| |||| ||||||    
T  27415768 tcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagcttgactcaacaagtcttgaaacgatggttggttcaagt 27415669  T
Q  391 atgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||| ||||||||||| | ||   |||  | |||||| || |||||||||||||||||||    
T  27415668 atgatatggggatcacaaatcgct---tttgttttccaacatacactgcaagatatccctttg 27415609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 445
Target Start/End: Original strand, 27419054 - 27419218
Alignment:
Q  281 taagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgat 380  Q
    ||||||| | ||||| | |||||||||||| ||||||||||||||||| |||||||| |||| ||| || | |||||| | |||||||||||| ||||      
T  27419054 taagaaagcatcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttctgattgatttagtaattcttgaaacgatggc 27419153  T
Q  381 tggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    |||||||| ||||||| ||| ||||| |||| | |||||   |||||||| || ||||| |||||    
T  27419154 tggctcaaatatgatactggaatcacgaaccgcctcattctatctccaacatagactgcgagata 27419218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 27485943 - 27486098
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||||| ||||| |||||||| |||| ||| || |||||||  |  |||||||||||  ||| |||| |||||||||||||    
T  27485943 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatat 27486042  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||  ||||||| ||||  || ||||||||| || ||||||| ||| |||||||    
T  27486043 tgggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttg 27486098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 453
Target Start/End: Complemental strand, 27506838 - 27506683
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||||| ||||| |||||||| |||| ||| || |||||||  |  |||||||||||  ||| |||| | |||||||||||    
T  27506838 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggtttaagtatgatat 27506739  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||||||||||| | ||  || |||||| || |||||||||| ||| |||||||    
T  27506738 tgggatcacaaaccgcgtctgtttctctccgacatatactgcaacatagccctttg 27506683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 453
Target Start/End: Original strand, 27478884 - 27479038
Alignment:
Q  299 gcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatatt 398  Q
    ||||||||| ||||| |||||||| ||||| |||||||| |||| ||| || |||||||  |  |||||||||||  ||| |||| ||||||||||||||    
T  27478884 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27478983  T
Q  399 gggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||  ||||||| ||||  || ||||||||| || ||||||| ||| |||||||    
T  27478984 gggacaacaaaccgcttctgtttctctccaacatacactgcaacatagccctttg 27479038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 27504062 - 27503964
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgata 396  Q
    |||||||||| ||||| |||||||||||||| |||||||| || | ||||||||||||| |||| || ||||||||||| | |||| ||||||||||||    
T  27504062 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 291 - 453
Target Start/End: Complemental strand, 27585835 - 27585673
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagt 390  Q
    |||||| |||||||||| |||||||| ||||||||||| |||||||| || | ||| ||||||||| |||  || ||||||||  ||| |||| ||||||    
T  27585835 tcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggcttgactcatcaaatcttgaaacaatggttggttcaagt 27585736  T
Q  391 atgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||  ||||||||||| |||||   ||  || |||||| | ||||| |||||||||||||    
T  27585735 atgatacggggatcacaaatctcttttgtttatcaccaacgcacactgcgagatatccctttg 27585673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 27424513 - 27424661
Alignment:
Q  297 ctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgata 396  Q
    ||||| ||||| || ||||||||||||||||| ||||||||  ||| ||| || | |||||| |  |||||||||||||| | |||| ||||||||||||    
T  27424513 ctgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgata 27424612  T
Q  397 ttgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
     ||| |||||||||| | ||||||  |||||||| || ||||| |||||    
T  27424613 ctggaatcacaaaccgcctcatttgatctccaacatagactgcgagata 27424661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 281 - 445
Target Start/End: Original strand, 27556362 - 27556526
Alignment:
Q  281 taagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgat 380  Q
    ||||||| | ||||| ||||| |||||||||||||||||||| | ||| |||||||| |||| ||| || |||||||  | ||||||||||||||| | |    
T  27556362 taagaaagcatcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgcttgatgtagtaattcttgaaatgaaggt 27556461  T
Q  381 tggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    ||| ||||  |||| || || |||||||| | ||||||||  |||||||| || ||||| |||||    
T  27556462 tggttcaataatgaaatgggaatcacaaatcgcttcattttttctccaacataaactgcgagata 27556526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 453
Target Start/End: Complemental strand, 27420548 - 27420393
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||||| ||||| |||||||| || | ||||||  ||||| |||  ||  |||||||||| | |||||||||||||||||     
T  27420548 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcaacttgactcagcaagccttgaaatgaaggttggctcaagtatgatac 27420449  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     ||||| | | ||| | ||  || ||||||||| ||||||||||||||||||||||    
T  27420448 ggggattaaataccgcgtctgtttctctccaacatatactgcaagatatccctttg 27420393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 291 - 445
Target Start/End: Original strand, 27421924 - 27422082
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatggtcatatccg----aattgttcctcggcttgattcaataattcttgaaatgatgattggctc 386  Q
    ||||| |||||||||||||||||||||||| ||||||| || |||||     |||| ||| || |||||||| | ||||||||||||| ||| |||| ||    
T  27421924 tcttcactgcaaggaattgtgagaccacccgttggatgatcgtatccatccaaattcttcttctgcttgatttagtaattcttgaaataatggttggttc 27422023  T
Q  387 aagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    |||||||||| ||| ||||| ||||  ||||||   |||||||| || ||||| |||||    
T  27422024 aagtatgatactggaatcacgaaccgtttcattctatctccaacatagactgcgagata 27422082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 27507760 - 27507857
Alignment:
Q  245 aagatattagcacagattcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaatt 342  Q
    ||||| |||||||  | |||| |||||||| |||||||||||||  ||||||   ||||||||||| |||||||||||||||||||||||||| ||||    
T  27507760 aagatgttagcacctactcaagcgagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccattggatggtcatatccaaatt 27507857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 27490096 - 27490020
Alignment:
Q  302 aggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatg 378  Q
    |||||| ||||| |||||||||||||| |||||||| || | |||||||||||||||||| || |||||||||||||    
T  27490096 aggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgattcaacaaatcttgaaatgatg 27490020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 445
Target Start/End: Original strand, 27559223 - 27559387
Alignment:
Q  281 taagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgat 380  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||| || | ||| || | |||  | ||||| | ||||||||| |||    
T  27559223 taagaaagcatcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttctgattggcttaataactattgaaatgaagat 27559322  T
Q  381 tggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    ||  ||||  |||| || || |||| ||| ||||||||||  |||||||| || ||||| |||||    
T  27559323 tgattcaataatgaaataggaatcagaaatctcttcattttgtctccaacataaactgcgagata 27559387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 396
Target Start/End: Original strand, 27468327 - 27468425
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgata 396  Q
    |||||||||| ||||| |||||||| ||||| |||||||| |||| |||||||| |||| |||| || ||||||||||| | |||| | ||||||||||    
T  27468327 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttggtttaagtatgata 27468425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 396
Target Start/End: Complemental strand, 27524664 - 27524566
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgata 396  Q
    |||| ||||| ||||| |||||||||||||| |||||||| || | |||||| ||||||||||| || ||||||||||| | |||| |||| |||||||    
T  27524664 tgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagcttgattcaacaagtcttgaaatgaaggttggttcaaatatgata 27524566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 396
Target Start/End: Original strand, 27475580 - 27475677
Alignment:
Q  299 gcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgata 396  Q
    ||||||||| ||||| |||||||| ||||| |||||||| || | ||||||||||||| |||| || ||||||||||| | |||  ||||||||||||    
T  27475580 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 396
Target Start/End: Complemental strand, 27515038 - 27514933
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagt 390  Q
    |||||| | |||||||| ||||| |||||||| ||||| |||||||| |||| |||||||| |||| |||| || ||||||||||| | |||  ||||||    
T  27515038 tcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaagt 27514939  T
Q  391 atgata 396  Q
    ||||||    
T  27514938 atgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 27554637 - 27554564
Alignment:
Q  28 aaatatgtctctttgtattatatttctgcatttaagtttgtaatacaactt-agttgaaaattttcgtaaataa 100  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||| || | |||||||||||| |||||||    
T  27554637 aaatgtgtctctttatattatatttctgcatataagtttgtaatacaagttaatttgaaaattttcctaaataa 27554564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 407
Target Start/End: Complemental strand, 27423376 - 27423253
Alignment:
Q  284 gaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattgg 383  Q
    |||||| |||||  |||||||||  ||||| |||||||| ||||| |  || || || | ||||||||||||| |||| |||||||||||||| | ||||    
T  27423376 gaaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttgg 27423277  T
Q  384 ctcaagtatgatattgggatcaca 407  Q
     |||||||||||||  ||||||||    
T  27423276 ttcaagtatgatatgcggatcaca 27423253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 453
Target Start/End: Original strand, 27565953 - 27566106
Alignment:
Q  300 caaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattg 399  Q
    |||||||| ||||| |||||||||||||| ||||||||    | ||||||  ||||  |||  || ||||||||  ||| |||| ||| ||||||||| |    
T  27565953 caaggaatggtgaggccacccattggatgatcatatccatgctcttcctcaacttgtatcagcaagtcttgaaacaatggttggttcaggtatgatatgg 27566052  T
Q  400 ggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||||||| | |||   || ||||||||| || |||||||||||||||||||    
T  27566053 ggatcacaaatcgcttttgtttctctccaacatacactgcaagatatccctttg 27566106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 27495683 - 27495646
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatg 328  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  27495683 tcttctctgcaaggaatggtgagaccacccattggatg 27495646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 291 - 328
Target Start/End: Complemental strand, 27600700 - 27600663
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatg 328  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27600700 tcttctttgcaaggaattgtgagaccacccattggatg 27600663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 27497322 - 27497477
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||  | ||||| |||||||| || | |||||| |||||| |||| || | ||||||  ||| |||| | |||||||| ||    
T  27497322 tgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagcttgactcaacaaatattgaaacaatggttggtttaagtatgagat 27497421  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     ||||||||||||| |||   ||  |||||||| || ||||||| ||| |||||||    
T  27497422 agggatcacaaaccgcttttgtttatctccaacatacactgcaacatagccctttg 27497477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 394
Target Start/End: Complemental strand, 27508987 - 27508896
Alignment:
Q  303 ggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatga 394  Q
    ||||| ||||| |||||| ||||||| |||||||| || | |||||| || |||||||| || ||||||||||| | |||| |||| |||||    
T  27508987 ggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagcctgattcaacaagtcttgaaatgaaggttggttcaaatatga 27508896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 453
Target Start/End: Complemental strand, 27527281 - 27527146
Alignment:
Q  318 cccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttca 417  Q
    ||||| ||||| |||||||| || | |||||| |||||| |||  || ||| |||| |||| |||| | |||| ||||||||||||||||||||  |||     
T  27527281 cccatgggatgatcatatccaaactcttcctcagcttgactcagcaactctagaaacgatggttggtttaagtgtgatattgggatcacaaaccgtttct 27527182  T
Q  418 tttcctctccaacgtatactgcaagatatccctttg 453  Q
     ||  |||||||| || || |||||||| |||||||    
T  27527181 gtttatctccaacatacaccgcaagatagccctttg 27527146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 27446306 - 27446250
Alignment:
Q  279 tctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatat 335  Q
    ||||||||||| ||||| ||||||||||| | ||||||| ||||| |||| ||||||    
T  27446306 tctaagaaaacatcttcactgcaaggaatcgagagaccatccattcgatgatcatat 27446250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 268 - 453
Target Start/End: Original strand, 38040051 - 38040236
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||| |  |     
T  38040051 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaggtt 38040150  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||| | |||| ||||||||||  | ||||| ||||| | |||||||| |||||||||||| ||||||||||| |||||||    
T  38040151 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttg 38040236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 268 - 453
Target Start/End: Original strand, 38028736 - 38028921
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||| ||||||||||||| |||| |  |     
T  38028736 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatccaaattcttcctcggcttgactcaacaggtt 38028835  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||| | |||| ||||||||||  | ||||| ||||| | |||||||| |||||||||||| ||||||||||| |||||||    
T  38028836 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctccaacgtacactgcaagatagccctttg 38028921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 268 - 453
Target Start/End: Original strand, 38036763 - 38036948
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    ||||||||||||  |||||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| |||| || |     
T  38036763 gagaagtaatatgcaagaaaacgtattctgtgcaaggaattgtgaggccgcccattggatggtcatatccgaattcttcctcggcttgactcaacaaatt 38036862  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||| | |||| |||||||||  || ||||  |||||||  ||||||| |||||||||||| ||||||||||| |||||||    
T  38036863 ttgaaatgaagcttggttcaagtatggcatggggacaacaaaccgtttcatttgctctccaacgtacactgcaagatagccctttg 38036948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 267 - 453
Target Start/End: Original strand, 50904761 - 50904947
Alignment:
Q  267 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataatt 366  Q
    |||||||| ||||  || ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||  ||||| ||| || |||| || |    
T  50904761 cgagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattggatgatcatatccgaattcatcctctgctcgactcaacaagt 50904860  T
Q  367 cttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||||||| | |||| ||||||| || ||  |||||||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  50904861 cttgaaatgaagtttggttcaagtaggacatatggatcacaaaccgcttcatttcttctccaacgtacactgcaagatatccctttg 50904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 267 - 453
Target Start/End: Original strand, 38024844 - 38025030
Alignment:
Q  267 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataatt 366  Q
    ||||||||||| || | ||||| ||||||| |||||||||| ||||| ||||||||||| || |||||||| |||| |||||| |||||| ||||||| |    
T  38024844 cgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt 38024943  T
Q  367 cttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     |||||| || | |||| |||||||||| || ||||| ||||||| |||||||| ||||||||| |||||||||||||| |||||||    
T  38024944 tttgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttg 38025030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 267 - 453
Target Start/End: Original strand, 38031296 - 38031482
Alignment:
Q  267 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataatt 366  Q
    ||||||||||| || | ||||| ||||||| |||||||||| ||||| ||||||||||| || |||||||| |||| |||||| |||||| ||||||| |    
T  38031296 cgagaagtaatttccatgaaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt 38031395  T
Q  367 cttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     |||||| || | |||| |||||||||| || ||||| ||||||| |||||||| ||||||||| |||||||||||||| |||||||    
T  38031396 tttgaaaggaagcttggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatatactgcaagatagccctttg 38031482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 267 - 443
Target Start/End: Complemental strand, 55084957 - 55084781
Alignment:
Q  267 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataatt 366  Q
    |||||||||||||  |||||||| |||||| |||||||||||||||| |||||||||||||| || ||||| |||| |||||| ||  || |||| || |    
T  55084957 cgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccaaattcttcctccgcccgactcaacaagt 55084858  T
Q  367 cttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaaga 443  Q
    |||||||||||| |||| ||||||| || || ||||||||||||| |||||||| ||||||||| || |||||||||    
T  55084857 cttgaaatgatggttggttcaagtaagacatagggatcacaaaccgcttcattttctctccaacatacactgcaaga 55084781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 267 - 453
Target Start/End: Complemental strand, 50910131 - 50909945
Alignment:
Q  267 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataatt 366  Q
    ||||||||||| |  ||||| || |||||| |||||||||||||||| |||||||||||||| |||||||| |||| ||||||  |||||||||| || |    
T  50910131 cgagaagtaatttgcaagaagacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttcctccacttgattcaacaagt 50910032  T
Q  367 cttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     ||||||||| | |||| |||||||||| || ||||| ||||||| |  ||||| ||||||||| || ||||||||||| |||||||    
T  50910031 tttgaaatgaagcttggttcaagtatgacatggggataacaaaccgcagcatttgctctccaacatacactgcaagataaccctttg 50909945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 453
Target Start/End: Original strand, 38033744 - 38033934
Alignment:
Q  267 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccaccc----attggatggtcatatccgaattgttcctcggcttgattcaat 362  Q
    |||||||||||||  |||||||| |||||| |||| ||||||||||  || |||    ||||||||||||||||| |||| ||||||||||||| ||||     
T  38033744 cgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccgcccattaattggatggtcatatccaaattcttcctcggcttgactcaac 38033843  T
Q  363 aattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    || | ||||||||| | |||| ||||||||||  | ||||| ||||||| |||||||| |||||||| ||| ||||||||||| |||||||    
T  38033844 aagttttgaaatgaagcttggttcaagtatgacgtggggataacaaaccgcttcatttgctctccaatgtacactgcaagatagccctttg 38033934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 298 - 445
Target Start/End: Complemental strand, 38044043 - 38043896
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||||||||| || ||||||||||| |||||||| |||| |||||| |||||| |||  || |||||||| || | |||  |||||||||| ||    
T  38044043 tgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatgacat 38043944  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
     ||||||||||||| ||||||||||||||||| ||| |||||||||||    
T  38043943 agggatcacaaaccgcttcatttcctctccaaagtacactgcaagata 38043896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 282 - 453
Target Start/End: Original strand, 48840696 - 48840866
Alignment:
Q  282 aagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgatt 381  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||| |||||||| |||| || |||  ||| | |||| || ||||||||||| | ||    
T  48840696 aagaaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctttctccactt-actcaacaagtcttgaaatgaggctt 48840794  T
Q  382 ggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    || |||||||||  || ||||| ||||| | |||||| |||||||| ||||| | |||||||||||||||||    
T  48840795 ggttcaagtatggcatggggattacaaatcgcttcatctcctctccgacgtacaatgcaagatatccctttg 48840866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 282 - 453
Target Start/End: Original strand, 50911853 - 50912024
Alignment:
Q  282 aagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgatt 381  Q
    ||||||||  ||||| ||||||||||||| || ||||||||||| || |||||||| |||| |||||| |||||| |||| || | ||||||||| | ||    
T  50911853 aagaaaacaccttctgtgcaaggaattgttaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaacaagttttgaaatgaagctt 50911952  T
Q  382 ggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    || ||||||||||  | |||||||||||||  ||||| |  |||||||| ||||| |||||||| |||||||    
T  50911953 ggttcaagtatgacttggggatcacaaaccgtttcatcttgtctccaacatataccgcaagatagccctttg 50912024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 445
Target Start/End: Complemental strand, 50913549 - 50913489
Alignment:
Q  385 tcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagata 445  Q
    ||||| |||||||||| ||||  ||||||||||||| ||||||||| || |||||||||||    
T  50913549 tcaagaatgatattggaatcaagaacctcttcattttctctccaacatacactgcaagata 50913489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 328
Target Start/End: Complemental strand, 38035212 - 38035165
Alignment:
Q  281 taagaaaacgtcttctctgcaaggaattgtgagaccacccattggatg 328  Q
    |||||| ||||||||  |||| ||||||||||||||||||||||||||    
T  38035212 taagaatacgtcttccttgcagggaattgtgagaccacccattggatg 38035165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 268 - 453
Target Start/End: Original strand, 21604724 - 21604909
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattc 367  Q
    ||||||||||||  ||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||| ||||||| ||||| |||| |  |     
T  21604724 gagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattggatggtcatatcctaattcttcctcgtcttgactcaacatgtt 21604823  T
Q  368 ttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||| | |||| ||||||||||  | ||||| ||||| | |||||||| |||||| || || ||||||||||| |||||||    
T  21604824 ttgaaatgaagcttggttcaagtatgacgtggggataacaaatcgcttcatttgctctcctacttacactgcaagatagccctttg 21604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 267 - 453
Target Start/End: Original strand, 21607265 - 21607451
Alignment:
Q  267 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataatt 366  Q
    ||||||||||| || | |||||  |||||| |||||||||  ||||| ||||||||||| || |||||||| |||| |||||| |||||| ||||||| |    
T  21607265 cgagaagtaatttccatgaaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttcctctgcttgactcaataagt 21607364  T
Q  367 cttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     |||||| || | | || |||||||||| || ||||| ||||||| |||||||| ||||||||| ||||| ||||||||||||||||    
T  21607365 tttgaaaggaagctcggttcaagtatgacatggggataacaaaccgcttcatttgctctccaacatataccgcaagatatccctttg 21607451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 373
Target Start/End: Complemental strand, 21634699 - 21634608
Alignment:
Q  282 aagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaa 373  Q
    |||||||| |||||  |||||||||||||||  || |||||| |||| |||||||| |||| |||||| |||||| |||  || ||||||||    
T  21634699 aagaaaacatcttcggtgcaaggaattgtgaagccgcccattcgatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaa 21634608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 285 - 453
Target Start/End: Complemental strand, 3073722 - 3073554
Alignment:
Q  285 aaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggc 384  Q
    ||||| |||||| |||||||||||||||| |||||||||||||| || |||||||||| |||||| ||  || |||  || | ||||||||| | ||||     
T  3073722 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcgtatccgaattcttcctctgcccgactcagcaagtattgaaatgaagtttggt 3073623  T
Q  385 tcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    ||||||||||  | ||||||||||||| ||||||||||||||||||||| || ||||||||||||||||    
T  3073622 tcaagtatgacgtagggatcacaaaccgcttcatttcctctccaacgtacaccgcaagatatccctttg 3073554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 453
Target Start/End: Original strand, 1754206 - 1754396
Alignment:
Q  262 tcaaacgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaa 361  Q
    |||| |||||||| ||||||||||||| || |||||| |||||||| |||||||||||||| ||||| |||||| | || |||||||| | ||  || |     
T  1754206 tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttag 1754304  T
Q  362 taattcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
     |||| ||||||||| |||||| ||||||||||||  ||||||||||||| ||||||||| |||||||| ||||| || |||||||| ||||    
T  1754305 caatttttgaaatgacgattggttcaagtatgatacggggatcacaaaccgcttcatttcttctccaacatatacagctagatatccttttg 1754396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 268 - 433
Target Start/End: Complemental strand, 1759422 - 1759253
Alignment:
Q  268 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgat----tcaata 363  Q
    ||||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||||  ||| | ||||||||||| ||||| |    |||| |    
T  1759422 gagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccacccattggatggttgtattcaaattgttcctcagcttgcttggctcaaca 1759323  T
Q  364 attcttgaaatgatgattggctcaagtatgatattgggatcacaaacctcttcatttcctctccaacgta 433  Q
    ||||||| ||||||| |||| | || |||||||  || |||||||||| |||||||| |||||| |||||    
T  1759322 attcttggaatgatgtttggtttaaatatgatacaggaatcacaaaccgcttcattttctctcctacgta 1759253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 298 - 453
Target Start/End: Original strand, 1756757 - 1756912
Alignment:
Q  298 tgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagtatgatat 397  Q
    |||||||||| ||||| |||||||| || || |||||||| |||| ||| || |||||| |||| || | |||||| |||| |||| |||||||||||||    
T  1756757 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatat 1756856  T
Q  398 tgggatcacaaacctcttcatttcctctccaacgtatactgcaagatatccctttg 453  Q
    |||||||||||||| ||||  || ||||||||| |  ||||||||||| |||||||    
T  1756857 tgggatcacaaaccgcttctgtttctctccaacattcactgcaagatagccctttg 1756912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 407
Target Start/End: Complemental strand, 1754835 - 1754719
Alignment:
Q  291 tcttctctgcaaggaattgtgagaccacccattggatggtcatatccgaattgttcctcggcttgattcaataattcttgaaatgatgattggctcaagt 390  Q
    |||||| ||||| |||| ||||| |||||||||||||| |||||||| || | |||| | |||||| |||| ||   |||||| |||| |||  ||||||    
T  1754835 tcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggattgaaacgatggttgattcaagt 1754736  T
Q  391 atgatattgggatcaca 407  Q
    |||||||||||||||||    
T  1754735 atgatattgggatcaca 1754719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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