View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4842_low_3 (Length: 440)

Name: NF4842_low_3
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4842_low_3
NF4842_low_3
[»] chr7 (3 HSPs)
chr7 (98-425)||(32196197-32196524)
chr7 (183-271)||(7500917-7501005)
chr7 (272-332)||(7500838-7500898)
[»] chr1 (1 HSPs)
chr1 (159-271)||(43059679-43059791)
[»] chr8 (2 HSPs)
chr8 (183-271)||(10007314-10007402)
chr8 (272-332)||(10007421-10007481)
[»] chr3 (2 HSPs)
chr3 (183-271)||(47615122-47615210)
chr3 (272-332)||(47615229-47615289)
[»] chr6 (2 HSPs)
chr6 (198-268)||(7315865-7315935)
chr6 (272-332)||(7315957-7316017)
[»] chr5 (2 HSPs)
chr5 (183-271)||(18486449-18486537)
chr5 (272-332)||(18486556-18486616)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 98 - 425
Target Start/End: Original strand, 32196197 - 32196524
Alignment:
Q  98 tttcccttttcccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcg 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196197 tttcccttttcccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcg 32196296  T
Q  198 tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcggattcttggtctacggtggtggtggaag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32196297 tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcggtttcttggtctacggtggtggtggaag 32196396  T
Q  298 ttagcttggggtttttgttggggaggtgatgggtttcttcttgatcgggtttgcgtttggtggggaatgtgggttcttcgtggttgttggtttcgggttc 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32196397 ttagcttggggtttttgttggggaggtgatgggtttcttcttgatcgggtttgcgtttggtggggaatgtgggttcttcgtggttgttggtttcgggttc 32196496  T
Q  398 agccatgagtgagggtttagcacaggtt 425  Q
    ||||||||||||||||||||| ||||||    
T  32196497 agccatgagtgagggtttagcgcaggtt 32196524  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 7501005 - 7500917
Alignment:
Q  183 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 271  Q
    ||||| ||||| || ||||||||||  ||||||||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||    
T  7501005 tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgtcggaagagcaattgacggtggagggaagttcgga 7500917  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 7500898 - 7500838
Alignment:
Q  272 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 332  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  7500898 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 7500838  T

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Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 159 - 271
Target Start/End: Original strand, 43059679 - 43059791
Alignment:
Q  159 tcatcggaattctcctcatcctcgtcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtgg 258  Q
    |||||| |||||||||| || ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||    
T  43059679 tcatcgaaattctcctcgtcttcgtcctcttcgtcatcttcgtcagtgttattttcgggttcgttgttgggaacgacgtcggaagagcaattgacggtgg 43059778  T
Q  259 tgggaagttcgga 271  Q
     || |||||||||    
T  43059779 aggtaagttcgga 43059791  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 10007314 - 10007402
Alignment:
Q  183 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 271  Q
    ||||| ||||| || ||||| ||||  ||||||||||||||||||||| ||||||| |||||  |||||||||||| ||||||||||||    
T  10007314 tcgtcctcgtcgtcttcgtcggtgtcattttcgggttcgttgttgggatcggcgtcagaagagcaattgacggtggagggaagttcgga 10007402  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 10007421 - 10007481
Alignment:
Q  272 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 332  Q
    ||||||||||||| |||| || |  |||||||||||| |||||||||| ||||||||||||    
T  10007421 ttcttggtctacgatggttgtagttgttagcttgggggttttgttgggaaggtgatgggtt 10007481  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 47615122 - 47615210
Alignment:
Q  183 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 271  Q
    ||||| ||||| || ||||||||||  ||||||||||||||||||||| ||||| || ||||  |||||||||||| ||||||||||||    
T  47615122 tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgacgaaagagcaattgacggtggagggaagttcgga 47615210  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 47615229 - 47615289
Alignment:
Q  272 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 332  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  47615229 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 47615289  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 7315865 - 7315935
Alignment:
Q  198 tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttc 268  Q
    ||||||||||  ||||||||||||||||||||| ||| |||||||||  |||||||||||| |||||||||    
T  7315865 tcgtcagtgtcattttcgggttcgttgttgggatcggtgtcggaagagcaattgacggtggagggaagttc 7315935  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 7315957 - 7316017
Alignment:
Q  272 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 332  Q
    ||||||||||||||||||||  |  |||| ||||||| |||| ||||| ||||||||||||    
T  7315957 ttcttggtctacggtggtggcagttgttaccttgggggtttttttgggaaggtgatgggtt 7316017  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 183 - 271
Target Start/End: Original strand, 18486449 - 18486537
Alignment:
Q  183 tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgacggtggtgggaagttcgga 271  Q
    ||||| ||||| || ||||||||||  |||||| |||||||||||||| ||||| || ||||  |||||||||||| ||||||||||||    
T  18486449 tcgtcctcgtcgtcttcgtcagtgtcattttcgagttcgttgttgggatcggcgacgaaagagcaattgacggtggagggaagttcgga 18486537  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 18486556 - 18486616
Alignment:
Q  272 ttcttggtctacggtggtggtggaagttagcttggggtttttgttggggaggtgatgggtt 332  Q
    ||||||||||||||||||||  |  |||||||||||| |||||||||| ||||||||||||    
T  18486556 ttcttggtctacggtggtggcagttgttagcttgggggttttgttgggaaggtgatgggtt 18486616  T

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