View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842_low_5 (Length: 415)
Name: NF4842_low_5
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842_low_5 |
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| [»] scaffold0126 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 330
Target Start/End: Complemental strand, 17596060 - 17595740
Alignment:
| Q |
12 |
tagattatactggaaataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagttcctattttctattttctacnnnnnnn |
111 |
Q |
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| T |
17596060 |
tagattacactggaaataagttgggaatgcctaatttcagatttaacaccttttaaaaaggttttggtatagtttctattttctattttctactcttttt |
17595961 |
T |
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| Q |
112 |
-ggtttatattgaattgatgctctttgaatctatttnnnnnnn-gaaagtacgtagatttctagggtataaattaaattaagtgacgacaaaaataattt |
209 |
Q |
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| T |
17595960 |
tggtttatattgaattgatgctctttgaatctatttaaaaaaaagaaagtacgtagatttctagggcataaatcaagttaagggacgacgaaaataattt |
17595861 |
T |
|
| Q |
210 |
tctttaaaataaaatcccttgttattgattttttgttttgctaatgaatgcattgtaannnnnnnnaaaagcacatgaagctcaaagggtaacaaaaggt |
309 |
Q |
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| T |
17595860 |
tgtttaaaataaaatcccttgttattgattttttgttttgctaatgaatgcattgtaatttttttaaaaagcacatgaagctcaaagggtaacaaaaggt |
17595761 |
T |
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| Q |
310 |
tttatcaagtaacaataatgt |
330 |
Q |
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||||||||||||||||||||| |
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| T |
17595760 |
tttatcaagtaacaataatgt |
17595740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Complemental strand, 34427090 - 34427032
Alignment:
| Q |
26 |
aataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagt |
84 |
Q |
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| T |
34427090 |
aataggttgggaatacccaatttcaaatttaacaccttttaaaaaagttttggtttagt |
34427032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 347 - 392
Target Start/End: Complemental strand, 17595752 - 17595707
Alignment:
| Q |
347 |
gtaacaataatgtgtatatacaagtaaatgaataatacctttctat |
392 |
Q |
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| T |
17595752 |
gtaacaataatgtatatatacaaagaaatgaataatacctttctat |
17595707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 10194056 - 10194016
Alignment:
| Q |
44 |
aatttaagatttaacaccttttaaaaaagttttggtatagt |
84 |
Q |
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| T |
10194056 |
aatttcagatttaacaccttttgaaaaggttttggtatagt |
10194016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 41517826 - 41517773
Alignment:
| Q |
31 |
gttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggtatagt |
84 |
Q |
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|||||||||||||||||| |||||| || ||||| |||| ||||||||||||| |
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| T |
41517826 |
gttgggaatgcctaatttcagattttgcaacttttgaaaaggttttggtatagt |
41517773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 19280646 - 19280593
Alignment:
| Q |
26 |
aataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt |
79 |
Q |
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|||| |||||| ||||| ||||| || |||||||||||||||||| |||||||| |
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| T |
19280646 |
aatatgttgggtatgcccaatttcaggtttaacaccttttaaaaaggttttggt |
19280593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 45992435 - 45992488
Alignment:
| Q |
26 |
aataagttgggaatgcctaatttaagatttaacaccttttaaaaaagttttggt |
79 |
Q |
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||||||||||| ||||| ||||| ||||||||||||| || |||| |||||||| |
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| T |
45992435 |
aataagttgggtatgcccaatttcagatttaacacctattgaaaaggttttggt |
45992488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 44095 - 44127
Alignment:
| Q |
114 |
tttatattgaattgatgctctttgaatctattt |
146 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
44095 |
tttatattgaattgatgctctttgcatctattt |
44127 |
T |
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