View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4842_low_8 (Length: 276)
Name: NF4842_low_8
Description: NF4842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4842_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 98 - 253
Target Start/End: Original strand, 32196197 - 32196352
Alignment:
| Q |
98 |
tttcccttttcccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcg |
197 |
Q |
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| T |
32196197 |
tttcccttttcccttgtcatctcgcataatcccttttcccttcctgtccaccacaggctcctcatcggaattctcctcatcctcgtcgtcttcgtcatcg |
32196296 |
T |
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| Q |
198 |
tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgac |
253 |
Q |
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| T |
32196297 |
tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgac |
32196352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 7501005 - 7500935
Alignment:
| Q |
183 |
tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgac |
253 |
Q |
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| T |
7501005 |
tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgtcggaagagcaattgac |
7500935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 159 - 253
Target Start/End: Original strand, 43059679 - 43059773
Alignment:
| Q |
159 |
tcatcggaattctcctcatcctcgtcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgac |
253 |
Q |
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| T |
43059679 |
tcatcgaaattctcctcgtcttcgtcctcttcgtcatcttcgtcagtgttattttcgggttcgttgttgggaacgacgtcggaagagcaattgac |
43059773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 253
Target Start/End: Original strand, 7315865 - 7315920
Alignment:
| Q |
198 |
tcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgac |
253 |
Q |
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| T |
7315865 |
tcgtcagtgtcattttcgggttcgttgttgggatcggtgtcggaagagcaattgac |
7315920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 10007314 - 10007384
Alignment:
| Q |
183 |
tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgac |
253 |
Q |
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| T |
10007314 |
tcgtcctcgtcgtcttcgtcggtgtcattttcgggttcgttgttgggatcggcgtcagaagagcaattgac |
10007384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 47615122 - 47615192
Alignment:
| Q |
183 |
tcgtcttcgtcatcgtcgtcagtgttgttttcgggttcgttgttgggaacggcgtcggaagaagaattgac |
253 |
Q |
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||||| ||||| || |||||||||| ||||||||||||||||||||| ||||| || |||| ||||||| |
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| T |
47615122 |
tcgtcctcgtcgtcttcgtcagtgtcattttcgggttcgttgttgggatcggcgacgaaagagcaattgac |
47615192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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