View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4843-Insertion-12 (Length: 180)
Name: NF4843-Insertion-12
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-12 |
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| [»] chr8 (3 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 12587093 - 12587257
Alignment:
| Q |
16 |
ataagttataactaccctataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12587093 |
ataagttataactaccctataaacactactcatgagtacataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaa |
12587192 |
T |
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| Q |
116 |
gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12587193 |
gcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaacccta |
12587257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 6e-51
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 35036295 - 35036146
Alignment:
| Q |
21 |
ttataactaccctataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaagcaat |
120 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||| |
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| T |
35036295 |
ttataactaccctataaacactactcatgagtacataaaaatcataggaaatcaatcataaaaaggacataaaaacatcaacataaacacttaaaggaat |
35036196 |
T |
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| Q |
121 |
aaaatagtagtaaagtttaagattgttgaataatcccaaataatcactta |
170 |
Q |
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|||||||| | |||||| | ||| |||||||||||||||| || |||||| |
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| T |
35036195 |
aaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacactta |
35036146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 34 - 180
Target Start/End: Original strand, 27323131 - 27323269
Alignment:
| Q |
34 |
ataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaagcaataaaatagtagtaa |
133 |
Q |
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||||||||| ||||||||| |||| |||||||| |||||||||| ||||||||||||||| || |||||||||||||||||||| || || |
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| T |
27323131 |
ataaacactgttcatgagtacataacaatcatagaaaatcaatca--------acataaaaacatcaaagcaaacacttaaagcaataaaataacagcaa |
27323222 |
T |
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| Q |
134 |
agtttaagattgttgaataatcccaaataatcacttatcaaacccta |
180 |
Q |
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|||| |||||| ||||||||||| ||||||||| || |||||||||| |
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| T |
27323223 |
agttcaagattattgaataatcctaaataatcatttgtcaaacccta |
27323269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 2e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 2e-81
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 49602643 - 49602807
Alignment:
| Q |
16 |
ataagttataactaccctataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49602643 |
ataagttataactaccctataaacactactcatgagtacataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacaaacacttaaa |
49602742 |
T |
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| Q |
116 |
gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
180 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49602743 |
gcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
49602807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 6e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 6901249 - 6901085
Alignment:
| Q |
16 |
ataagttataactaccctataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6901249 |
ataagttataactaccctataaacactactcatgagtacataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacaaacacttaaa |
6901150 |
T |
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| Q |
116 |
gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
180 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
6901149 |
gcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcacttatcaaacccta |
6901085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 6e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 21880091 - 21880255
Alignment:
| Q |
16 |
ataagttataactaccctataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |
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| T |
21880091 |
ataagttataactaccctataaacactactcatgagtacataaaaatcataggaaatcgatcataaaaataacataaaaacatcaacacaaacacttaaa |
21880190 |
T |
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| Q |
116 |
gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21880191 |
gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
21880255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 15494177 - 15494216
Alignment:
| Q |
75 |
atcataaaaagaacataaaaacatcaacacagacacttaa |
114 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |
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| T |
15494177 |
atcataaaaagaacataaaaacatcaacacaaacacttaa |
15494216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 1e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 22970534 - 22970370
Alignment:
| Q |
16 |
ataagttataactaccctataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |
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| T |
22970534 |
ataagttataactaccctataaacactactcatgagtacataaaaatcataggaaatctatcataaaaataacataaaaacatcaacacatacacttaaa |
22970435 |
T |
|
| Q |
116 |
gcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
22970434 |
gcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaacccta |
22970370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 9e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 3497270 - 3497398
Alignment:
| Q |
21 |
ttataactaccctataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaagcaat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||| |
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| T |
3497270 |
ttataactaccctataaacactactcat---tacataaaaatcataggaaatcaatcataaaaaggacataaaaatatcaacataaacacttaaagcaat |
3497366 |
T |
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| Q |
121 |
aaaatagtagtaaagtttaagattgttgaata |
152 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| |
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|
| T |
3497367 |
aaaatagtcgtaaagttcaagattgttgaata |
3497398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 35360317 - 35360414
Alignment:
| Q |
70 |
aatcaatcataaaaagaacataaaaacatcaacacagacacttaaagcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcact |
168 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | ||| | |||| | |||||| || ||||||||| ||||||||||||| |||||||| |||| |
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| T |
35360317 |
aatcaatcataaaaagaacat-aaaacatcaacataaacattggaagcgaaaaaataacagcaaagtttaaaattgttgaataattccaaataaacact |
35360414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 22329616 - 22329762
Alignment:
| Q |
33 |
tataaacactactcatgagtagataaaaatcataggaaatcaatcataaaaagaacataaaaacatcaacacagacacttaaagcaataaaatagtagta |
132 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||| ||||||| ||||||| |||||||||| |||||||||| || | |
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| T |
22329616 |
tataaacactactcatgagtacataaaaataatagggaatcaatcataaaagaaacaaaaaaacaccaacacaaacacttaaagtaataaaatagcagca |
22329715 |
T |
|
| Q |
133 |
aagtttaagattgttgaataatcccaaataatcacttatcaaacccta |
180 |
Q |
| |
|
|| || ||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
22329716 |
aaattcaagattg-taaataatcccaaataatcacttatcaaacccta |
22329762 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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