View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4843-Insertion-13 (Length: 159)

Name: NF4843-Insertion-13
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4843-Insertion-13
NF4843-Insertion-13
[»] chr6 (9 HSPs)
chr6 (8-157)||(4365661-4365810)
chr6 (13-157)||(4360270-4360414)
chr6 (12-146)||(4370065-4370199)
chr6 (101-157)||(5725491-5725547)
chr6 (27-157)||(4389919-4390049)
chr6 (116-157)||(4377325-4377366)
chr6 (116-157)||(4384898-4384939)
chr6 (22-157)||(4414506-4414640)
chr6 (22-70)||(5725578-5725626)
[»] chr8 (1 HSPs)
chr8 (113-153)||(15658713-15658753)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 3e-77; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 3e-77
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 4365661 - 4365810
Alignment:
Q  8 gtcagaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4365661 gtcagaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtca 4365760  T
Q  108 caatgtggacaacattttcttccccaacctcttcaacaacgtcatccatc 157  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4365761 caatgtggacagcattttcttccccaacctcttcaacaacgtcatccatc 4365810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 4360270 - 4360414
Alignment:
Q  13 aatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatg 112  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||  |||||| ||| | ||||||  |||||||||||| |||| |    
T  4360270 aatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaacg 4360369  T
Q  113 tggacaacattttcttccccaacctcttcaacaacgtcatccatc 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  4360370 tggacaacattttcttccccaacctcttcaacaacgtcatccatc 4360414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 6e-23
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 4370065 - 4370199
Alignment:
Q  12 gaatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaat 111  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||| |||||| ||||  | |  | |||  | || ||  |||||  |||||||||||    
T  4370065 gaatgcaatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaat 4370164  T
Q  112 gtggacaacattttcttccccaacctcttcaacaa 146  Q
     ||||||||||||||||| ||||||||||||||||    
T  4370165 ttggacaacattttcttctccaacctcttcaacaa 4370199  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 5725547 - 5725491
Alignment:
Q  101 tccgtcacaatgtggacaacattttcttccccaacctcttcaacaacgtcatccatc 157  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  5725547 tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatc 5725491  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 4389919 - 4390049
Alignment:
Q  27 cacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaacattttc 126  Q
    ||||||| |||||||||| ||||||||| ||| |||||| ||||  | | || |||  | | ||| | ||||  ||||||||||  || |||||||||||    
T  4389919 cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttc 4390018  T
Q  127 ttccccaacctcttcaacaacgtcatccatc 157  Q
    ||| ||||||||||||||||| |||||||||    
T  4390019 ttcaccaacctcttcaacaacatcatccatc 4390049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 4377325 - 4377366
Alignment:
Q  116 acaacattttcttccccaacctcttcaacaacgtcatccatc 157  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  4377325 acaacattttcttccccaacctcttcaacaacatcatccatc 4377366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 4384898 - 4384939
Alignment:
Q  116 acaacattttcttccccaacctcttcaacaacgtcatccatc 157  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  4384898 acaacattttcttccccaacctcttcaacaacatcatccatc 4384939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 4414640 - 4414506
Alignment:
Q  22 tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaaca 121  Q
    |||||||||||| |||||||||| ||||||||||||| |||||  ||||  | | ||  ||  ||||||   |||||  || |||||||| |||||||||    
T  4414640 tgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaaca 4414541  T
Q  122 ttttcttccccaacctcttcaacaacgtcatccatc 157  Q
    ||||||| |||||||||||| ||||  |||||||||    
T  4414540 ttttctt-cccaacctcttctacaatttcatccatc 4414506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 5725626 - 5725578
Alignment:
Q  22 tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatc 70  Q
    |||||||||||| |||||||||| |||||||||||||  ||||| ||||    
T  5725626 tgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatc 5725578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 15658753 - 15658713
Alignment:
Q  113 tggacaacattttcttccccaacctcttcaacaacgtcatc 153  Q
    ||||||||||||||||| |||| |||||||||||| |||||    
T  15658753 tggacaacattttcttctccaatctcttcaacaacatcatc 15658713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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