View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4843-Insertion-2 (Length: 830)
Name: NF4843-Insertion-2
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 24 - 313
Target Start/End: Original strand, 1267662 - 1267949
Alignment:
| Q |
24 |
cacgggtaagggggagactttgtgaaatcaaagttccctaaatgagttgcgcatcaatgtaggtcttctttccttttatccccaacacaactaattcact |
123 |
Q |
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| T |
1267662 |
cacggataagggtgagactttgtgaaatcaaagttccctaaatgagttgcgcatcaatgtaggtcttctttccttttatccccaacacaactaattcact |
1267761 |
T |
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| Q |
124 |
atccatttttaagataatttatctcatatggcattgttatattgatggggtgtaccacgccaatgctttagtgcaacactcgcggttacatttcccattc |
223 |
Q |
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| T |
1267762 |
atccatttttaagataatttatctcatacggcattgttatattgatcgggtgtaccacgccaatgctttagtgcaacactcgtggttacatttcccattc |
1267861 |
T |
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| Q |
224 |
gcttatctagggaacaaacttccaaccgaaaatgagtgcaatattcaagcaatgagtaaatattactttcctcttttcaaattggaaatg |
313 |
Q |
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| T |
1267862 |
gcttatccagggaacaaacttccaaccgaaaatgagagcaatattcaagcaatgagtaaatattactttc--cttttcaaattggaaatg |
1267949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 612 - 830
Target Start/End: Original strand, 1267947 - 1268165
Alignment:
| Q |
612 |
atgatggggatgccttggttcatctttcttttggattgttaattgtatttatttgttaaattattccttaattttccatgtttgtaggtctaatcttgtt |
711 |
Q |
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| T |
1267947 |
atgatggggatgccttggttcatctttcttttggattgttaattgtatttatttgttaaattattccttaattttccatgtttgtaggtctaatcttgtt |
1268046 |
T |
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| Q |
712 |
tagtcgatatttctcaacgcaaacacaactcaaattgagatttatttgtgggaagagagactctttaaagtcttaggtgaaggaaaaaatattctaaaac |
811 |
Q |
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| T |
1268047 |
tagttgatatttgtcaacgcaaacacaactcaaattgagatttatttgtgggaagagagactttttaaagtcttaggtgaaggaaaaaatattctaaaac |
1268146 |
T |
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| Q |
812 |
aatgtagtttctcatttta |
830 |
Q |
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| T |
1268147 |
aatgtagtttctcatttta |
1268165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 530 - 830
Target Start/End: Original strand, 1265597 - 1265893
Alignment:
| Q |
530 |
tggaaggtgtcatatggtcattttaatacaaatggtgtagaatgcaagaattgtcacatttttgttaagttagcacatatttatgatggggatgccttgg |
629 |
Q |
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| T |
1265597 |
tggaaggtgtcacatggtcattctgatacaaatggtgtagaatgtaagatttgtcacaattttgttaagttagcacaaatttataatggg-atgccttgg |
1265695 |
T |
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| Q |
630 |
ttcatctttcttttggattgttaattgtatttatttgttaaattattccttaattttccatgtttgtaggtctaatcttgtttagtcgatatttctcaac |
729 |
Q |
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| T |
1265696 |
ttcatctttcttttggattgttagttgtatttatttgtaaaattattcctcaattttccttg-ttgtaggtctaatcttgtttagttgatatttgtcaac |
1265794 |
T |
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| Q |
730 |
gcaaacacaactcaaattgagatttatttgtgggaagagagactctttaaagtcttaggtgaaggaaaaaatattctaaaacaatgtagtttctcatttt |
829 |
Q |
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| T |
1265795 |
gcaaacacaactcaaactgagatttatttggaggaatagagactttttgaagtc-taggtgaa-gaaaaaatattctaaaacaatgtagtttctcatttt |
1265892 |
T |
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