View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4843-Insertion-4 (Length: 787)
Name: NF4843-Insertion-4
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 465
Target Start/End: Complemental strand, 3961070 - 3960621
Alignment:
| Q |
10 |
ttttatccattgtgaaaaggtgattgatatttggtataaggtgattatgtggtc-gaaatctgtttcataaatccacctaacttg------cattgggag |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||| |
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| T |
3961070 |
ttttatccattgtgaaaaggtgattgatatttggtataaggtgattatgtggttagaaatctgtttcatatatcctcctaacttgtttgtgcattgggag |
3960971 |
T |
|
| Q |
103 |
tgttgaagtttagaaggtagaaacaagaggatccggaagggtttgcatcttatttggcatgcaacgatttcggccatttggcaagcgaggagaatcaaat |
202 |
Q |
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| T |
3960970 |
tgttggagtttaaaaggtagaaacaagaggatccagaaggatttgcgtcttatttggcatgcaatgatttgggccatttggcaagcgagaa--atcaaat |
3960873 |
T |
|
| Q |
203 |
catttttaagaacgaggttagtgcagtggaagatattgcggaggcggtgaaagttttatcttagcggtggagtttggagaggttgaacatcttgacttgt |
302 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3960872 |
catttttaagaacgaggttagtgcggtggaagatattgtggaggcggtgaaagttttatcttagcggtggagtttggagaggttgaacatcctgacttgt |
3960773 |
T |
|
| Q |
303 |
ttgttctacgagtcagtggatttggaatccgaaggattgccttttgaggtaataggggttgctgtctgggccctggggtctgccgtgatttggttttagg |
402 |
Q |
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| T |
3960772 |
ttgtgctacg----agtggatgtggaatctgaaggattgccttttgaggtaataggagtcgcggt-------ctggggttttccttgattcggttttggg |
3960684 |
T |
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| Q |
403 |
actgtttcattagtccgttgggagctctgcaagcggtttgggtttttgccttgctgctgtctt |
465 |
Q |
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| T |
3960683 |
actatttcattagtccgttgggagctctgcaagcggttcgggtttttgccttgctgctatctt |
3960621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 575 - 733
Target Start/End: Complemental strand, 3960479 - 3960314
Alignment:
| Q |
575 |
agttgacccggttttgctgctgtttcgtgtcgcacttgg-tttggtttcgtattggttgggtgcagca-tggttttcggttgnnnnnnnggtctggagtg |
672 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||| | |
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| T |
3960479 |
agttgacccggttttgctgctgtttcgtgtcggacttggttttggtttcgtattggtcgggtgcagcagtggttttcggttatttttttggtctggagcg |
3960380 |
T |
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| Q |
673 |
tcca-gggcatcggttga-ggtagtagttaagc-gttggctgatcttttgg--tttgtttttgggg |
733 |
Q |
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| T |
3960379 |
tccaggggcattggttgagggtagtagttaagcggttggctgatcttttggcttttgtttttgggg |
3960314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 575 - 766
Target Start/End: Complemental strand, 3960099 - 3959899
Alignment:
| Q |
575 |
agttgacccggttttgctgctgtttcgtgtcgcacttggtttgg-tttcgtattggttgggtgcagca-tggttttcggttgnnnnnnnggtctggagtg |
672 |
Q |
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| T |
3960099 |
agttgacctggttttgctgctgtttcgtttccggcttggttttgatttcgtattagtcgggtgcagcagtggttttcggttgttttttttgtcttgagtg |
3960000 |
T |
|
| Q |
673 |
tccaggg-catcggttgagg-tagtagttaagcg-ttggctgatcttttgg--tttgtttttggggtttc-tcatgtatacg-aatcactgtattcacac |
765 |
Q |
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| T |
3959999 |
tccaggggcatcggttgagggtagtagttaggtggttggctgatcttttggcttttgtttttgggggttcctcatgtatacggaatcactgtattcacac |
3959900 |
T |
|
| Q |
766 |
t |
766 |
Q |
| |
|
| |
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|
| T |
3959899 |
t |
3959899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 377 - 463
Target Start/End: Complemental strand, 3960316 - 3960230
Alignment:
| Q |
377 |
ggggtctgccgtgatttggttttaggactgtttcattagtccgttgggagctctgcaagcggtttgggtttttgccttgctgctgtc |
463 |
Q |
| |
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||||| || ||||||| |||||| ||||||||||||||||| |||||||||||||| ||||| | |||||| ||||||||||||||| |
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| T |
3960316 |
ggggtttgacgtgattcggttttgggactgtttcattagtcagttgggagctctgccagcggctcgggtttctgccttgctgctgtc |
3960230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 3960604 - 3960562
Alignment:
| Q |
453 |
ttgctgctgtcttagtttgcgcagagctgagcgcgttttttcc |
495 |
Q |
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| T |
3960604 |
ttgctgctgtcttagtttgcgcagagctgagcgcgttttttcc |
3960562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 24945337 - 24945410
Alignment:
| Q |
115 |
gaaggtagaaacaagaggatccggaagggtttgcatcttatttggcatgcaacgatttcggccatttggcaagc |
188 |
Q |
| |
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||||||||||| ||||||||||| ||||| ||| |||||||||||||||| |||| | | ||||||||||| |
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| T |
24945337 |
gaaggtagaaataagaggatccgtaaggggttgtggattatttggcatgcaactatttggtcaatttggcaagc |
24945410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 9359539 - 9359438
Alignment:
| Q |
92 |
tgcattgggagtgttgaagtttagaaggtagaaacaagaggatccggaagggtttgcatcttatttggcatgcaacgatttcggccatttggcaagcgag |
191 |
Q |
| |
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||||||||| ||||| ||| | ||||| |||||||||| ||| || ||||| ||| |||||||||||||||| |||| ||| ||||||||||| || |
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| T |
9359539 |
tgcattgggcatgttggagtattgaagggagaaacaagaagattcgcaaggggttgtggattatttggcatgcaactatttgggctatttggcaagctag |
9359440 |
T |
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| Q |
192 |
ga |
193 |
Q |
| |
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|| |
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|
| T |
9359439 |
ga |
9359438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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