View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4843-Insertion-5 (Length: 616)
Name: NF4843-Insertion-5
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 44827315 - 44827921
Alignment:
| Q |
8 |
cacacaagaataaggacatggagaaaaaactcttaaaaataaggaatgatgaacattttgaatgacatagatggggagcggagagtactccccatcccgc |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44827315 |
cacacgagaataaggacatggagaaaaaactcttaaaaataaggaatgatgaacattttgaatgacatagatggggagcggagagtactccccatcccgc |
44827414 |
T |
|
| Q |
108 |
ctcgttgacgtctccaattccaccacatctcatatatataactttcacctcatactagtcaaacactcctataaaatatgagtatggacaattcaagact |
207 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44827415 |
ctcgttgacgtcttcaattccaccacatctcatatatataactttcacctcatactaatcaaacactcctataaaatatga-tatggacaattcaagact |
44827513 |
T |
|
| Q |
208 |
taaactnnnnnnnnnncacaaaggagatggggatatgaaatgaatgattgtactcacaatgcgcattgcatttgattgtccattttcgctcatggatcca |
307 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44827514 |
tggactaaaaaaaaa-cacaaaggagatggggatatgaaatgaatgattgtactcacaatgcgcattgcatttgattgtccattttcgcccatggatcca |
44827612 |
T |
|
| Q |
308 |
tgtggcattgactcttcagcatacatgtatctagcaacttccgtacaagtcttcatcataaaaagtatgttcttagctataagacaactgcaaagcataa |
407 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44827613 |
tgtgggattgactcttcagcatacatgtatctagcaacttccgtgcaagtcttcatcataaaaagtatgttcttagctataagacaactgcaaagcataa |
44827712 |
T |
|
| Q |
408 |
attgcatataagccaaaacatgagaaaaatggacttagcttaaatatgaggtgaaaaatgagaaagatttttatacctatttctcccaaacatttctatt |
507 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44827713 |
attgcatataagccaaaacattagaaaaatggacttagcttaaatgtgaggtgaaaaatgagaaagatttttatacctatttctcccaaacatttctatt |
44827812 |
T |
|
| Q |
508 |
cccttcaagtataattctttttccaaaagtttccaatccgaaggaatagactcctcctcagcttgtccttctattgagtcagacaagtgcttggattttc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44827813 |
cccttcaagtataattctttttccaaaagtttccaatccgaaggaatagactcctcctcagcttgtccttctattgagtcagacaagtgcttggattttc |
44827912 |
T |
|
| Q |
608 |
tttcatcca |
616 |
Q |
| |
|
||||||||| |
|
|
| T |
44827913 |
tttcatcca |
44827921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 288 - 397
Target Start/End: Original strand, 8371351 - 8371460
Alignment:
| Q |
288 |
cattttcgctcatggatccatgtggcattgactcttcagcatacatgtatctagcaacttccgtacaagtcttcatcataaaaagtatgttcttagctat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | |||||||||||||| ||||||| |||||| | ||| |
|
|
| T |
8371351 |
cattttcgctcatggatccatgtggcattggaacttcagcatacatgtagctagcaacttccttgcaagtcttcatcatgaaaagtaagttcttcgatat |
8371450 |
T |
|
| Q |
388 |
aagacaactg |
397 |
Q |
| |
|
||| |||||| |
|
|
| T |
8371451 |
aaggcaactg |
8371460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 288 - 405
Target Start/End: Original strand, 8369951 - 8370068
Alignment:
| Q |
288 |
cattttcgctcatggatccatgtggcattgactcttcagcatacatgtatctagcaacttccgtacaagtcttcatcataaaaagtatgttcttagctat |
387 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||| |||||||||| |||||||||||| | |||||||||||||||||||||| |||||| | ||| |
|
|
| T |
8369951 |
cattttcgtccatggatccatgtgacattggaacttcatcatacatgtagctagcaacttccttgcaagtcttcatcataaaaagtaagttcttcgatat |
8370050 |
T |
|
| Q |
388 |
aagacaactgcaaagcat |
405 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
8370051 |
aaggcaactgcatagcat |
8370068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 544
Target Start/End: Original strand, 8371539 - 8371623
Alignment:
| Q |
458 |
gtgaaaaatgagaaagatttttatacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaat |
544 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
8371539 |
gtgaaaaataagaaagattc--atacctatttctcccaaacatttctattcccttcatacatagttctttctccaaaagtttccaat |
8371623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 543
Target Start/End: Original strand, 8370139 - 8370222
Alignment:
| Q |
458 |
gtgaaaaatgagaaagatttttatacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaa |
543 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |
|
|
| T |
8370139 |
gtgaaaaataagaaagattc--atacctatttctcccaaacatttctattcccttcagacataaatctttctccaaaagtttccaa |
8370222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 545
Target Start/End: Complemental strand, 38936358 - 38936293
Alignment:
| Q |
480 |
atacctatttctcccaaacatttctattcccttcaagtataattctttttccaaaagtttccaatc |
545 |
Q |
| |
|
|||||| ||||| ||||||||||| | ||||||||||||||| ||||| || | | |||||||||| |
|
|
| T |
38936358 |
atacctgtttctgccaaacatttccactcccttcaagtataactctttctctagaggtttccaatc |
38936293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University