View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4843-Insertion-6 (Length: 528)
Name: NF4843-Insertion-6
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 25628982 - 25628688
Alignment:
| Q |
8 |
caatcagctagctatttttagcaagaacttggtaagaaacaagacgagaaagaacaagtttgtgattgtatttgatagtgtgaaatacgagaaccaatgc |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||| || ||||||| |||||||||||||||| |
|
|
| T |
25628982 |
caatcagctagctatttttagtaagaacttggtaagaaacaagacgagaaaggacaggtttgtgagtgtattcgagagtgtgagatacgagaaccaatgc |
25628883 |
T |
|
| Q |
108 |
--------ctcgatcacaagaataatcaatatataagttttagacactaaacaatgaaaaaagtaagccttcattaactacacatgatcaataagttcct |
199 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| |
|
|
| T |
25628882 |
caaggaggctcgatcataagaa-aatcaatatataagtttcagaaactaaacaatgaaaaaagtaagcatttattaactacacatgatcaacaagttcc- |
25628785 |
T |
|
| Q |
200 |
tactattagaatcatcttccaagtagattgaacttggattgcagcattattaagc--taataaaagataaaactagtaccaacctttactacagaattgt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||||| |||||| || |
|
|
| T |
25628784 |
-----ttagaatcatcttccaagtagattgaacttggattgcagcatgattaagctataataaaagataaaactggtacctacctttactgcagaatagt |
25628690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 449 - 528
Target Start/End: Complemental strand, 25628506 - 25628427
Alignment:
| Q |
449 |
aaactatcaaatttaagaaaagaattattttatcatcctcatctcaacaaaaatatatcatcccaatagtacaatctact |
528 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25628506 |
aaactatcaaatttaagaaatgaattattctatcatcctcatctcaaccaaaatatatcatcccaatagtacaatctact |
25628427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 25628581 - 25628507
Alignment:
| Q |
347 |
gaagttaatactgcttgtaggaaatagcaagttatgtgtgtttggttctagaatatgacttaaagcaaaagtgat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |||||||||||||| |
|
|
| T |
25628581 |
gaagttaatactgcttgtaggaaatagcaagtcatgtgtgtttggttttagaagatgactaaaagcaaaagtgat |
25628507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 208 - 301
Target Start/End: Complemental strand, 25621216 - 25621122
Alignment:
| Q |
208 |
gaatcatcttccaagtagattg-aacttggattgcagcattattaagctaataaaagataaaactagtaccaacctttactacagaattgtttaa |
301 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| || ||||||||| |||||||||||| ||| |||||||||| || ||||||| ||||| |
|
|
| T |
25621216 |
gaatcatcttccaagtagattggaacttggattgccacactattaagcttataaaagataaatttagcaccaaccttttctgcagaattttttaa |
25621122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 287
Target Start/End: Complemental strand, 25625083 - 25625014
Alignment:
| Q |
219 |
caagtagattgaa-cttggattgcagcattattaagctaataaaagataaaactagtaccaacctttact |
287 |
Q |
| |
|
||||||||||||| ||||||||||| || |||||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
25625083 |
caagtagattgaaacttggattgcaacactattaagctaataaaagaaaaaaccagcaccaacctttact |
25625014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 25636488 - 25636448
Alignment:
| Q |
391 |
gttctagaatatgacttaaagcaaaagtgatttgattgtca |
431 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
25636488 |
gttctagaatatgactaaaagcaacagtgatttgattgtca |
25636448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University