View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4843-Insertion-7 (Length: 502)
Name: NF4843-Insertion-7
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 4160132 - 4159638
Alignment:
| Q |
8 |
ccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagccaaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4160132 |
ccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaaattaatcattttggaatcactagccaaag |
4160033 |
T |
|
| Q |
108 |
catcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaatagagtgagatcttcctcataaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4160032 |
catcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagcaaatagagtgagatcttcctcataaac |
4159933 |
T |
|
| Q |
208 |
ccatttctttaacttatgaaatgaagctgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctct |
307 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4159932 |
ccatttctttaagttatgaaatgaagttgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctct |
4159833 |
T |
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| Q |
308 |
gaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgct |
407 |
Q |
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| T |
4159832 |
gaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgct |
4159733 |
T |
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| Q |
408 |
gcacgttatcgactttggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatg |
502 |
Q |
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| T |
4159732 |
gcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtggataatatttggtatg |
4159638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Original strand, 4171870 - 4172364
Alignment:
| Q |
8 |
ccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagccaaag |
107 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||||||||| || |
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| T |
4171870 |
ccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaattaatcattttggaatcactagccatag |
4171969 |
T |
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| Q |
108 |
catcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaatagagtgagatcttcctcataaac |
207 |
Q |
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| T |
4171970 |
catcattgaacaatctattatattcaggatttttgttaagaaactcccataaatcacatcctaaagaggtagcaaagagggtgagatcttcctcataaat |
4172069 |
T |
|
| Q |
208 |
ccatttctttaacttatgaaatgaagctgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctct |
307 |
Q |
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||| ||||| || |||||||||||| | || | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4172070 |
ccacttcttgaaattatgaaatgaaacattaaatttaggatcaagaacacactcaaccattggagctaaacaaagttcagtccctttaacaagaagctct |
4172169 |
T |
|
| Q |
308 |
gaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgct |
407 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
4172170 |
gaagtaactgtgagagcataagcttcttcttcattttccaattcttgattcgttactatctcaaagaatccattgtgtgcaaggagacgcatgagacgct |
4172269 |
T |
|
| Q |
408 |
gcacgttatcgactttggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatg |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
4172270 |
gcacgttatcgactttggttgatggaatttgaagaattgaaactaagtttgaaagagtaattggtttgccatgattgtagataatagttggtatg |
4172364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 502
Target Start/End: Original strand, 4177493 - 4177972
Alignment:
| Q |
8 |
ccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagccaaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||| |||||| || |||| ||| ||||||||||||| | |
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| T |
4177493 |
ccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagtttatcaatttagaatcactagccattg |
4177592 |
T |
|
| Q |
108 |
catcattgtataatgtattatactcagggtttttgttaagaaactcccataaatcacaacctaaattgacagtaaatagagtgagatcttcctcataaac |
207 |
Q |
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||||||| || || ||||||| ||||| ||||| | |||||| ||||| ||| || | |||||| | ||| ||| || || |||||||||||||||| |
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| T |
4177593 |
catcattaaatgatctattatattcaggatttttatcaagaaaatcccaaaaaccagaccctaaagtaacaccaaagagtgtaagatcttcctcataaat |
4177692 |
T |
|
| Q |
208 |
ccatttctttaacttatgaaatgaagctgaaagtgttggatcaagaacacactcaaccattggagctaaacaaagttcagttcctttaacaagaagctct |
307 |
Q |
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||||||||| | || |||| | ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||| ||| | ||| |||||||||||||| |
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| T |
4177693 |
ccatttcttcagctcatgatacgaacccgaaagagttggatcaagaacacactcaaccattggtgctaaacaaagatcactacctctaacaagaagctct |
4177792 |
T |
|
| Q |
308 |
gaagcaacagtgagagcataagcttcttcttcattttctaattcttgatttgtaattatctcaaagaatccattgtgtgcgaggtaacgcatgagacgct |
407 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
4177793 |
gaagcaacagtgagagcataagactcttcttc---------------ttttgtaattatctcaaagaatccgttgtgcgcgaggtaacgcatgagacgcc |
4177877 |
T |
|
| Q |
408 |
gcacgttatcgactttggttgatggaatttgaagaattgaaactaagttggaaagagtaattggtttgccatgattgtggataatatttggtatg |
502 |
Q |
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|||||||| | | ||| | ||||||| |||||||||||||||||| || ||||| | ||||||||||||||||||||| ||||||||||||||| |
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| T |
4177878 |
gcacgttacctattttcgacgatggaacttgaagaattgaaactaaatttgaaagtgaaattggtttgccatgattgtgaataatatttggtatg |
4177972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 34343617 - 34343525
Alignment:
| Q |
12 |
ttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagcca |
104 |
Q |
| |
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|||||||||||||||||||||| || || | ||| ||||||||| | |||||| ||||| |||||||| | ||||| ||||||||||||| |
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| T |
34343617 |
ttccaccaccaacatccacaatagaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
34343525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 34331014 - 34330971
Alignment:
| Q |
8 |
ccatttccaccaccaacatccacaattgattccaacccctcaaa |
51 |
Q |
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|||||||||||||||||||||||||| ||||| | ||||||||| |
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| T |
34331014 |
ccatttccaccaccaacatccacaatagattctatcccctcaaa |
34330971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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