View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4843-Insertion-8 (Length: 312)
Name: NF4843-Insertion-8
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-8 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 312
Target Start/End: Original strand, 31838217 - 31838521
Alignment:
| Q |
7 |
attaatgtgttaaaacttttatcttgtaagttttctttttgtaattgaatttcagtgtttgactccacctgcgagtctaaaggatccacctcccttgaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31838217 |
attaatgtgttaaaacttttatcttgtaagttt-ctttttgtaattgaatttcagtgtttgactccacctgcgagtctaaaggatccacctcccttgaaa |
31838315 |
T |
|
| Q |
107 |
taatgttttgcaagctaatcacggatgccgaagcagccaaaattggatcaagacaacgctgcggagttcctgctaaaccccctttgatcttcgctttgaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31838316 |
taatgttttgcaagctaatcacggatgccgaagcagccaaaattggatcaagacaacgctgcggagttcctgctaaaccccctttgatcttcgctttgaa |
31838415 |
T |
|
| Q |
207 |
gcttccatatcctgctaaaaattcacccggacacgacgcaacaacacctaagggatacagtgacgctaaatgcaatccaaaaatagcctcaacatcttca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31838416 |
gcttccatatcctgctaaaaattcacccggacgcgacgcaacaacacctaagggatacagtgacgctaaatgcaatccaaaaatagcctcaacatcttca |
31838515 |
T |
|
| Q |
307 |
agcaca |
312 |
Q |
| |
|
|||||| |
|
|
| T |
31838516 |
agcaca |
31838521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 55 - 312
Target Start/End: Complemental strand, 26264857 - 26264600
Alignment:
| Q |
55 |
atttcagtgtttgactccacctgcgagtctaaaggatccacctcccttgaaataatgttttgcaagctaatcacggatgccgaagcagccaaaattggat |
154 |
Q |
| |
|
|||| |||||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||| |||| |
|
|
| T |
26264857 |
attttagtgtttgactcaacctgggaatctaaaggatccacctcccttgaaacaatgttttgcaagctaatcaccgacattgaagcggccaaaacaggat |
26264758 |
T |
|
| Q |
155 |
caagacaacgctgcggagttcctgctaaaccccctttgatcttcgctttgaagcttccatatcctgctaaaaattcacccggacacgacgcaacaacacc |
254 |
Q |
| |
|
|||||||| |||||||| || | |||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| | || ||||||||||| |
|
|
| T |
26264757 |
caagacaatgctgcggaatttccgctaaaccccctttgatctttgctttgaagcttccacatcctgctaaaaaatcccccggtcgtgatgcaacaacacc |
26264658 |
T |
|
| Q |
255 |
taagggatacagtgacgctaaatgcaatccaaaaatagcctcaacatcttcaagcaca |
312 |
Q |
| |
|
|||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
26264657 |
taagggatactgtgtcgctaaatgcaatccgaaaatagcctctacatcttcaagcaca |
26264600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University