View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4843-Insertion-9 (Length: 306)
Name: NF4843-Insertion-9
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843-Insertion-9 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 306
Target Start/End: Complemental strand, 18345340 - 18345042
Alignment:
| Q |
8 |
gtattccgctcttctcatttcaattcatttataactacctttttaaaaatcaactaaaatcatttgcaaattcgtctgaatttaacctactataccctag |
107 |
Q |
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| T |
18345340 |
gtattccactcttctcatttcaattcatttataactacctttttaaaaatcaactaaaatcatttgcaaattcgtctgaatttaacctactgtaccctag |
18345241 |
T |
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| Q |
108 |
ctatattgagattctctcagaggcagaaaatctcaatatacgatataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgg |
207 |
Q |
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| T |
18345240 |
ctatattgagattctctcagaggcagaaaatctcaatatacggtataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgg |
18345141 |
T |
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| Q |
208 |
gttggttcacaattttttatcttgaaccggaaacatacaaatgttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataag |
306 |
Q |
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| T |
18345140 |
gttggttcacaattttttatcttgaaccggaaacatacaaaggttgtgttgagagatcaaaagctatggaacaagtttcagattccatgtacaaataag |
18345042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 18340179 - 18339897
Alignment:
| Q |
11 |
ttccgctcttctcatttcaattcatttataactacctttttaaaaatcaactaaaatcatttgcaaattcgtctgaatttaacctactataccctagcta |
110 |
Q |
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| T |
18340179 |
ttccgctcttgtcgtttcgattcgtttataactacctttttaaaaatcagttaatgtcgttagcgagtttctctgactttaacttgctttaccctagctt |
18340080 |
T |
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| Q |
111 |
tattgagattctctcagaggcagaaaatctcaatatacgatataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggtt |
210 |
Q |
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| T |
18340079 |
tattgagattctctctgaggatccgaatctctacgagcgttataacgctcgtggagagaatgttatgttgccggaggttccatttgaggattttcgggtt |
18339980 |
T |
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| Q |
211 |
ggttcacaattttttatcttgaaccggaaacatacaaatgttgtgttgagagatcaaaagctatggaacaagtttcagattcc |
293 |
Q |
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| T |
18339979 |
ggttcgcagttttttatcttgaataggaagcatgcaaaggttgtggtgagagattataagctatggaagaagtttcggattcc |
18339897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 151 - 298
Target Start/End: Original strand, 18303657 - 18303804
Alignment:
| Q |
151 |
tataatgctcgtggagagaatgtaatgatgccggaggttccatttgaggattttcgggttggttcacaattttttatcttgaaccggaaacatacaaatg |
250 |
Q |
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| T |
18303657 |
tataatgctcgtggaaaggatgtaatgatgccggaggtttcattcaaggattttcgcaaaggctcgcaattctttatcctgaaccggaaacatgcaaagg |
18303756 |
T |
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| Q |
251 |
ttgtgttgagagatcaaaagctatggaacaagtttcagattccatgta |
298 |
Q |
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| T |
18303757 |
ttgttctgcgagatcaaaagttgtggaagaagtttcggattccatgta |
18303804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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