View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4843_high_3 (Length: 480)
Name: NF4843_high_3
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 7340099 - 7340438
Alignment:
| Q |
10 |
attatactacaaatcttcactaaaattgataattcttggtgaactgtgcctctcttaatctaaattttctgtaacaacaaaaaatactacaacatgaatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7340099 |
attatactacaaatcttcactaaaattgataattcttggtgaactgtgcctctcttaatctaaattttctgtaacaacaaaaaatactacaacatgaatg |
7340198 |
T |
|
| Q |
110 |
tatgccatgtggttaatattcaaataattaataaagattattatttgtcaaataataatacatgcttcacnnnnnnnaatacgtttgaaaacattaaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||| |||||||||| |
|
|
| T |
7340199 |
tatgccatgtggttaatattcaaataattaataaagattattatttgt---aaaataatacatgcttcactttttttaatacgtgtgaagacattaaaaa |
7340295 |
T |
|
| Q |
210 |
tcaattgatttaggactgggggaatcaaaagttgaagaacacctagaaaagaatgctaattttttcaacagcagaagtcaacttataaccttaagaaaca |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7340296 |
tcaattgatttaggactgggggaatcaaatgttgaagaacacctagaaaagaatgctaattttttcaacagcagaagtcaacttataaccttaagaaaca |
7340395 |
T |
|
| Q |
310 |
tatttaatttatcccaaattaacctgaaaatgcaatttatctt |
352 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7340396 |
tatttaatttatcccaaattcacctgaaaatgcaatttatctt |
7340438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 461
Target Start/End: Original strand, 7340513 - 7340549
Alignment:
| Q |
425 |
atttcaatatgatagtacaaacattttgtgtctgcat |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7340513 |
atttcaatatgatagtacaaacattttgtgtctgcat |
7340549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University