View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4843_low_1 (Length: 866)
Name: NF4843_low_1
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 32609352 - 32609752
Alignment:
| Q |
9 |
acatcatcaaaattcataatccattgtatattctttgactaaaagtagaatcaagcaagaacaaaactcagcaagtcacaaaactatatcgatcgattta |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32609352 |
acatcatcaaaattcataatccattgtatattctttgactaaaagtagaatcaagcaagaacaaaactcagcaagtcacaaaactatatcgat--attta |
32609449 |
T |
|
| Q |
109 |
aacagnnnnnnncatagtgaaacaaccaatctcatctccctcaaattccattctatttctaattataaacgaataaaacaagtctcgaatcgtcaaaaca |
208 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32609450 |
aacagaaaaaaacatagtgaaacaaccaatctcatctccctcaaattccattctatttctaattataaacgaataaaacaagtctcgaatcgtcaaaaca |
32609549 |
T |
|
| Q |
209 |
tatatcataatccattctacattccttgactaacagtataatcaatcgagaccaacacataactatatcaattgattccatataatagtctcacataacc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
32609550 |
tatatcataatccattctacattccttgactaacagtataatcaatcgagaccaacacataactatatcaatcgattccatataataatctcacataacc |
32609649 |
T |
|
| Q |
309 |
aaatccataaatatttctaattataaacaaagtttcaaattaccaaaacatcatagaattcagaatccattctacattctttgactaacacagtaaaatc |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32609650 |
aaatccataaatatttctaattataaacaaagtttcaaattaccaaaacatcatagaattcagaatccattctacattctttgactaacacaataaaatc |
32609749 |
T |
|
| Q |
409 |
aag |
411 |
Q |
| |
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||| |
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|
| T |
32609750 |
aag |
32609752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 503 - 848
Target Start/End: Original strand, 32610127 - 32610473
Alignment:
| Q |
503 |
gaagtagcaattacccttccataagcattaacgtccaatccattcaccaacaaatcaccaatatctttcttcaaaaacttctccgtcgctttcctcttcc |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32610127 |
gaagtagcaattacccttccataagcattaacgtccaatccattcactaacaaatcaccaatatccttcttcaaaaacttctccgtcgctttcctcttcc |
32610226 |
T |
|
| Q |
603 |
tccttatcacatcgatccggttcttcgtcaacttaatcaacgacttacttcaaaattc-nnnnnnnnnnnnnnnnnnnnncctcatcataagttcataac |
701 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32610227 |
tccttatcacatcgatccggttcttcgtcaacttaatcaacgacttacttcaaaattcaaaaaaaaatcaaaatcaaaaacctcatcataagttcataac |
32610326 |
T |
|
| Q |
702 |
tatattaacaaactcattcaattcttcttaatcagaaactaaatcaagcatgcaaaacacaaaacatcattcaaatattaatcaacaattcttcaacgat |
801 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32610327 |
tatattaacaaactcattcaattcttcttaatcagaaactaaatcaagcatgcaaaacacaaaacatcattcaaatattaatcaacaattcttcaacgat |
32610426 |
T |
|
| Q |
802 |
ttacttcaaaattcaaagaagnnnnnnnncctaaaacctcatcataa |
848 |
Q |
| |
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| T |
32610427 |
ttacttcaaaattcaaagaagaaaaaaaacctaaaacctcatcataa |
32610473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 695 - 795
Target Start/End: Original strand, 32610468 - 32610568
Alignment:
| Q |
695 |
tcataactatattaacaaactcattcaattcttcttaatcagaaactaaatcaagcatgcaaaacacaaaacatcattcaaatattaatcaacaattctt |
794 |
Q |
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|||||| || |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32610468 |
tcataaatacattaacaaactcattcaaattttcttaatcagaaactaaatcaagcatgcaaaacacaaaacatcattcaaatattaatcaacaattctt |
32610567 |
T |
|
| Q |
795 |
c |
795 |
Q |
| |
|
| |
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|
| T |
32610568 |
c |
32610568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 32609292 - 32609355
Alignment:
| Q |
148 |
ctcaaattccattctatttctaattataaacgaa--taaaacaagtctcgaatcgtcaaaacat |
209 |
Q |
| |
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||||||||||||||||||||||||||||||| || |||| ||||||| ||||| |||||||| |
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| T |
32609292 |
ctcaaattccattctatttctaattataaaccaaattaaacaaagtctcaaatcgccaaaacat |
32609355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 32609328 - 32609393
Alignment:
| Q |
332 |
taaacaaagtttcaaattaccaaaacatcat-agaattcagaatccattctacattctttgactaa |
396 |
Q |
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|||||||||| |||||| |||||||||||| | |||||| |||||||| || ||||||||||||| |
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| T |
32609328 |
taaacaaagtctcaaatcgccaaaacatcatcaaaattcataatccattgtatattctttgactaa |
32609393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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