View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4843_low_2 (Length: 739)

Name: NF4843_low_2
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4843_low_2
NF4843_low_2
[»] chr4 (3 HSPs)
chr4 (366-724)||(4720878-4721230)
chr4 (82-201)||(4720187-4720306)
chr4 (265-371)||(4720377-4720484)
[»] scaffold0007 (2 HSPs)
scaffold0007 (84-183)||(251297-251395)
scaffold0007 (215-260)||(251417-251462)
[»] chr2 (4 HSPs)
chr2 (82-156)||(35464419-35464493)
chr2 (82-125)||(31367244-31367287)
chr2 (88-160)||(19617845-19617916)
chr2 (109-151)||(22530084-22530126)
[»] chr6 (3 HSPs)
chr6 (82-160)||(30424249-30424331)
chr6 (86-156)||(29821837-29821911)
chr6 (82-125)||(14216428-14216471)
[»] chr8 (2 HSPs)
chr8 (286-348)||(22494812-22494873)
chr8 (286-346)||(9428881-9428940)
[»] scaffold0173 (1 HSPs)
scaffold0173 (84-160)||(20525-20605)
[»] chr7 (1 HSPs)
chr7 (658-724)||(10597414-10597480)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 366 - 724
Target Start/End: Original strand, 4720878 - 4721230
Alignment:
Q  366 aaaaaagaatacgtgaaaatgatcaagacttgcccctatcaacagcagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac 465  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4720878 aaaaaataatacgtgaaaatgatcaagacttgcccctatcaacaacagattccatgcacggtacttgcaatttgcaaatgaaagttgttccaaaccaaac 4720977  T
Q  466 cggcataaggccaagtgtgaatgaatatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtatt 565  Q
    |||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4720978 cggcataaggccaagtgtgaa----tatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtatt 4721073  T
Q  566 gcagtgctggagcgcgtcaggattaatcctagccatcagaatcatctctaaccgctttcaaaacctagaggcagttatcaacatatccccaactatataa 665  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||  | | |||||||||    
T  4721074 gcagtgctggagcgcgtcaggattaatcctagccgtcagaatcatctctagcggctttcaaaacctagaggcagttatcaacata--ctcgactatataa 4721171  T
Q  666 gtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatc 724  Q
    |||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  4721172 gtgtgactcaacatcatgatcaaagtacaatctcattcacccattttttgcacacaatc 4721230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 4720187 - 4720306
Alignment:
Q  82 cctacacaaactaacattatgattacaaatgattaatactacttgtatttttgtggaaatgattgagttgattttcgtccaaaatcgatttgaaagaatt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||    
T  4720187 cctacacaaactaacattatgattacaaatgattaatactacttgtatttttttgaaaatgattgagttgattttcgtccaatatcgatttgaaggaatt 4720286  T
Q  182 gggagaatcggagaagtttt 201  Q
    ||||||||||||||||||||    
T  4720287 gggagaatcggagaagtttt 4720306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 265 - 371
Target Start/End: Original strand, 4720377 - 4720484
Alignment:
Q  265 tttgatggttaactactgaggga-tatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttccaattgttatttggtcc 363  Q
    |||| ||||||||||| |||||  ||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4720377 tttggtggttaactaccgagggggtatttatgtattttactggtgtttttcaacctttatgttaagtgtcaacaacaattttccaattgttatttggtcc 4720476  T
Q  364 ataaaaaa 371  Q
    ||||||||    
T  4720477 ataaaaaa 4720484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 251297 - 251395
Alignment:
Q  84 tacacaaactaacattatgattacaaatgattaatactacttgtatttttgtggaaatgattgagttgattttcgtccaaaatcgatttgaaagaattgg 183  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| || || | ||||||||||||||| ||||||||||||||| |||||||    
T  251297 tacacaaactaacattatgattacaaatgattaatactacttgtgtttttgtagagat-aatgagttgattttcgttcaaaatcgatttgaaggaattgg 251395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 251417 - 251462
Alignment:
Q  215 aaactgatatgaaaatgatgcttctatttttgtataaaggacgcat 260  Q
    |||||||||||||| |||||||| | ||| ||||||||||||||||    
T  251417 aaactgatatgaaactgatgcttatgtttatgtataaaggacgcat 251462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 35464419 - 35464493
Alignment:
Q  82 cctacacaaactaacattatgattacaaatgattaatactacttgtatttttgtggaaatgattgagttgatttt 156  Q
    |||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||| ||||||||    
T  35464419 cctacataaactaacattatgattacaaatgattaatactacttgtggttttgtggagatgattgacttgatttt 35464493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 31367287 - 31367244
Alignment:
Q  82 cctacacaaactaacattatgattacaaatgattaatactactt 125  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  31367287 cctacacaaactaacattatgattacaaatgatgaatactactt 31367244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 19617845 - 19617916
Alignment:
Q  88 caaactaacattatgattacaaatgattaatactacttgtatttttgtggaaatgattgagttgattttcgtc 160  Q
    ||||||||||||||||||| |||| |||||||||||||   |||||||||| |||||| | |||| |||||||    
T  19617845 caaactaacattatgattataaat-attaatactacttaagtttttgtggagatgattcacttgaatttcgtc 19617916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 22530084 - 22530126
Alignment:
Q  109 aatgattaatactacttgtatttttgtggaaatgattgagttg 151  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||    
T  22530084 aatgattaatactacttgtgtttttgtggagatggttgagttg 22530126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 30424249 - 30424331
Alignment:
Q  82 cctacacaaactaacattatgattacaaatgattaatac----tacttgtatttttgtggaaatgattgagttgattttcgtc 160  Q
    |||||||||||||||||||||||||||||||||||| ||    ||||||| |||||| ||| |||||||||||||||||||||    
T  30424249 cctacacaaactaacattatgattacaaatgattaacactacttacttgtgtttttgaggagatgattgagttgattttcgtc 30424331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 29821837 - 29821911
Alignment:
Q  86 cacaaactaacattatgattacaaatgattaatac----tacttgtatttttgtggaaatgattgagttgatttt 156  Q
    |||||||||||||||||||||||||||||||||||    ||||||| ||||| |||| || ||||||||||||||    
T  29821837 cacaaactaacattatgattacaaatgattaatactacttacttgtgtttttatggagataattgagttgatttt 29821911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 14216471 - 14216428
Alignment:
Q  82 cctacacaaactaacattatgattacaaatgattaatactactt 125  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  14216471 cctacacaaactaacattatgattacggatgattaatactactt 14216428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 22494873 - 22494812
Alignment:
Q  286 gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttcca 348  Q
    ||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||||||    
T  22494873 gatatttacgtattttactggtgtttttcagcc-ttctgttaagtgtcaacaacaattttcca 22494812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 9428940 - 9428881
Alignment:
Q  286 gatatttacatattttactggtgtttttcaacctttattttaagtgtcaacaacaattttc 346  Q
    ||||||| | ||||||| ||||||||||||||| |||| | ||||||||||||||||||||    
T  9428940 gatatttgcgtattttattggtgtttttcaacc-ttatgtgaagtgtcaacaacaattttc 9428881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 20525 - 20605
Alignment:
Q  84 tacacaaactaacattatgattacaaatgattaata----ctacttgtatttttgtggaaatgattgagttgattttcgtc 160  Q
    ||||||||||||||||||||||| ||||||||||||     ||||||| |||||||||| |||||| | |||| |||||||    
T  20525 tacacaaactaacattatgattataaatgattaatattatttacttgtgtttttgtggagatgattcacttgaatttcgtc 20605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 658 - 724
Target Start/End: Complemental strand, 10597480 - 10597414
Alignment:
Q  658 ctatataagtgtgactcagcatcatgatcaaggtacaatctcattcacccatattttgcacacaatc 724  Q
    ||||||||| |||||||||| ||| | |||||||||| | ||||||||||| |||| ||||||||||    
T  10597480 ctatataagcgtgactcagcgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatc 10597414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University