View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4843_low_5 (Length: 333)
Name: NF4843_low_5
Description: NF4843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4843_low_5 |
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| [»] scaffold0608 (3 HSPs) |
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Alignment Details
Target: scaffold0608 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 148 - 315
Target Start/End: Complemental strand, 6556 - 6390
Alignment:
| Q |
148 |
aaagggcaagctattataatacatgttcgcatatccgtgttcataaaaaatatatacccgaacgtattgttagcatgtatttttacctgtgcatttctac |
247 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| | |||||||||||||| |
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| T |
6556 |
aaagggcaagctattataa-acatgttcgcatatccgtgttcataaaaaatatatatctgaacttattgttagcatgtattttcatctgtgcatttctac |
6458 |
T |
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| Q |
248 |
aggaaagatgaacgtttaaagttgtaaaattatttaagtccaagatagaggtttgatggtttcgatag |
315 |
Q |
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| T |
6457 |
aggaaagatgaacgtttaaagttgcaaaattataaaagtccaagatagaggtttgatggtttcgatag |
6390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 6874 - 6738
Alignment:
| Q |
8 |
attatactattatcgttctttttccgtacctcatccaccaaccat-----gttacacacattttcttttagtcagtttgtgnnnnnnnngttttgctttg |
102 |
Q |
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| T |
6874 |
attatgctattatcgttctttttccgtacctcatccaccaaccatgttatgttacacacattttcttttagtcagtttgtgaaaaaaaagttttgctttg |
6775 |
T |
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| Q |
103 |
tccttttccatttgaacaaaaaatatcaattagttaa |
139 |
Q |
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| T |
6774 |
tccttttccatttgaacaaaaaatatcaattagttaa |
6738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 4386 - 4426
Alignment:
| Q |
99 |
tttgtccttttccatttgaacaaaaaatatcaattagttaa |
139 |
Q |
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| T |
4386 |
tttgtctttttctatttgaacaaagaatatcaattagttaa |
4426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 4e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 148 - 315
Target Start/End: Complemental strand, 11111119 - 11110953
Alignment:
| Q |
148 |
aaagggcaagctattataatacatgttcgcatatccgtgttcataaaaaatatatacccgaacgtattgttagcatgtatttttacctgtgcatttctac |
247 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| | |||||||||||||| |
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| T |
11111119 |
aaagggcaagctattataa-acatgttcgcatatccgtgttcataaaaaatatatatctgaacttattgttagcatgtattttcatctgtgcatttctac |
11111021 |
T |
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| Q |
248 |
aggaaagatgaacgtttaaagttgtaaaattatttaagtccaagatagaggtttgatggtttcgatag |
315 |
Q |
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| T |
11111020 |
aggaaagatgaacgtttaaagttgcaaaattataaaagtccaagatagaggtttgatggtttcgatag |
11110953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 11111437 - 11111301
Alignment:
| Q |
8 |
attatactattatcgttctttttccgtacctcatccaccaaccat-----gttacacacattttcttttagtcagtttgtgnnnnnnnngttttgctttg |
102 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11111437 |
attatgctattatcgttctttttccgtacctcatccaccaaccatgttatgttacacacattttcttttagtcagtttgtgaaaaaaaagttttgctttg |
11111338 |
T |
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| Q |
103 |
tccttttccatttgaacaaaaaatatcaattagttaa |
139 |
Q |
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| T |
11111337 |
tccttttccatttgaacaaaaaatatcaattagttaa |
11111301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 11108949 - 11108989
Alignment:
| Q |
99 |
tttgtccttttccatttgaacaaaaaatatcaattagttaa |
139 |
Q |
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| T |
11108949 |
tttgtctttttctatttgaacaaagaatatcaattagttaa |
11108989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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