View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844-Insertion-1 (Length: 846)
Name: NF4844-Insertion-1
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844-Insertion-1 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 6 - 369
Target Start/End: Complemental strand, 10102644 - 10102277
Alignment:
| Q |
6 |
catcgatctccccatttattgtaatgatcatactttcattgactttgacagaacggtaaggttgacgtcggatacatccaatatcctaccttaaagctat |
105 |
Q |
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| T |
10102644 |
catcaatctccccatttattgtaataatcatactttcattgactttgacagaacggtaaggttgacgtcggatacatccaatatcctaccttaaagctat |
10102545 |
T |
|
| Q |
106 |
ctaaggtgaaatgttggtcgtagtgtatgccaaaacttacagtcctttcaaggtttatcgaaaatcttaccatctcaaagatgatcgagagtgacggtgt |
205 |
Q |
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| T |
10102544 |
ctaaggtggaatgttggtcgtagtgtatgccaaaacttacagtcctttcaaggtttatcgaaagtcttaccatctcaaagatgattgagagtgacggtgt |
10102445 |
T |
|
| Q |
206 |
tattttggtgaatctcatgtctacactgagaagtgcctttggatnnnnnnntaa----tattggtaaacgaggttaaggctttgctttcaaattacatcc |
301 |
Q |
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| T |
10102444 |
tattttgatgaatctcatgtctacactgagaagtgcctttggataaaaaaaaaaaaatcattggtaaacaaggttaaggctttgctttcaaattacatcc |
10102345 |
T |
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| Q |
302 |
aatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca |
369 |
Q |
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| T |
10102344 |
aatttgatgtgcaagggttcttccgacttgccaaaattgataatacactgagaactcaaatgagagca |
10102277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 785 - 831
Target Start/End: Complemental strand, 10080007 - 10079961
Alignment:
| Q |
785 |
atatcatagattataaaataaaataagtttctttaataattaattta |
831 |
Q |
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| T |
10080007 |
atatcttaaattataaaataaaataagtttctttaataattaattta |
10079961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 795 - 831
Target Start/End: Complemental strand, 10084196 - 10084160
Alignment:
| Q |
795 |
ttataaaataaaataagtttctttaataattaattta |
831 |
Q |
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| T |
10084196 |
ttataaaataaaataagtttctttaataattaattta |
10084160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 799 - 838
Target Start/End: Complemental strand, 10104074 - 10104035
Alignment:
| Q |
799 |
aaaataaaataagtttctttaataattaatttatgagttt |
838 |
Q |
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| T |
10104074 |
aaaataaaataagtttctttaataattaatttataagttt |
10104035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 702 - 744
Target Start/End: Complemental strand, 10080091 - 10080049
Alignment:
| Q |
702 |
agccattaaatccaacggttgtaccctctttggcgtgtgaagt |
744 |
Q |
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| T |
10080091 |
agccattaaatccaacggttgtaccctctttagcatgtgaagt |
10080049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 774 - 806
Target Start/End: Complemental strand, 10102250 - 10102218
Alignment:
| Q |
774 |
acctttgcttaatatcatagattataaaataaa |
806 |
Q |
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|
| T |
10102250 |
acctttgcttaatatcatagattataaaataaa |
10102218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 702 - 744
Target Start/End: Complemental strand, 10084287 - 10084245
Alignment:
| Q |
702 |
agccattaaatccaacggttgtaccctctttggcgtgtgaagt |
744 |
Q |
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|||||||||||||||||| |||||||||||| || |||||||| |
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| T |
10084287 |
agccattaaatccaacgggtgtaccctctttagcatgtgaagt |
10084245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 702 - 744
Target Start/End: Complemental strand, 10096745 - 10096704
Alignment:
| Q |
702 |
agccattaaatccaacggttgtaccctctttggcgtgtgaagt |
744 |
Q |
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| T |
10096745 |
agccattaaatccaacggttgta-cctctttggcatgtgaagt |
10096704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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