View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844-Insertion-2 (Length: 813)
Name: NF4844-Insertion-2
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844-Insertion-2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 17 - 813
Target Start/End: Original strand, 40207796 - 40208589
Alignment:
| Q |
17 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttacatgagccaaattaacnnnnnnn-tcaaggtaaatcgttaattaacaaatcaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40207796 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttagatgagccaaattaaccaaaaaaatcaaggtaaatcgttaattaacaaatcaaa |
40207895 |
T |
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| Q |
116 |
gatgaatattgttagaattagttggaataacatttaaggttgtcactataaagtgtatatcatatacactttccgactaaataactaacttgtaactacc |
215 |
Q |
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| T |
40207896 |
gatgaatattgttagaattagttggaatatcgtttaaggttgtcactataaagtgtatatcata--cactttccgactaaataactaacttgtaactacc |
40207993 |
T |
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| Q |
216 |
ttaaacaacattcaacgaaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207994 |
ttaaacaacattcaacgaaatcaagtgagaacggtagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagc |
40208093 |
T |
|
| Q |
316 |
aattcccaaaacaccaacaccatcacattctgtgttacctttgatagaggtatcactttgtctactataaccaataatggtcaaaacagtgatgtatagg |
415 |
Q |
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| T |
40208094 |
aattcccaaaacaccaacaccatcacattctgtgttacctttgatagtggtatcactttgtctactataaccaataatggtcaaaacagtgatgtatagg |
40208193 |
T |
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| Q |
416 |
aagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaactcatctacatcaaacaaaggtgctggtggtggatcttggt |
515 |
Q |
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| T |
40208194 |
aagagaagagttgctacaaactcagctatgacagctctgtacaaagaccactttgttaactcatctaaatcaaacaaaggtgctggtggtggatcttggt |
40208293 |
T |
|
| Q |
516 |
aatccttagctgaaaattcaccaccttgttcttgaacctcaacatctttgcccatgtttgtgttcttgtgtttgtgccaagaggtggtgggtgtgtgtta |
615 |
Q |
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| T |
40208294 |
aatccttagctgaaaattcaccaccttgttcttgaacctcaacatctttgcccatgtttgtgttcttgtgtttgtgccaagaggtggtgggtgtgtgtta |
40208393 |
T |
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| Q |
616 |
cttaattgaagtgtactattttttgtgtggattgatgaatgagtagaaatatggtatttaaggaatcaaatgtgccaatcaaattaatttttaaattact |
715 |
Q |
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| T |
40208394 |
cttaattgaagtgtacta-tttttgtgtggattgatgaatgagtagaaatatggtatttaaggaatcaaatgtgccaatcaaattcatttttaaattact |
40208492 |
T |
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| Q |
716 |
agttttttgtttgtatacgcatgcattatgaacaatgacattaattatttttactatatagnnnnnnnnngccgaccttattagcttgatttcgcttg |
813 |
Q |
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| T |
40208493 |
agttttttgtttgtatacgcatgtattatgaacaatgacattaatta-ttttactatatagtttttttttgccgaccttattagcttgatttcgcttg |
40208589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 8e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 250 - 564
Target Start/End: Complemental strand, 21793305 - 21792997
Alignment:
| Q |
250 |
tagcttaccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcccaaaacaccaacaccatcacattctgtg |
349 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||||||||||| || || |
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| T |
21793305 |
tagcataccagagataccggcggtgcagtaaacaagaatgaaaatcatgccaccaaaagcccaagcaatacccaaaattccaacaccatcacagtcggta |
21793206 |
T |
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| Q |
350 |
ttacctttgatagaggtatcactttgtctactataaccaataatggtcaaaacagtgatgtataggaagagaagagttgctacaaactcagctatgacag |
449 |
Q |
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| T |
21793205 |
ccacca--gctttagg-atcagactggtggctataaccaataatggtcaaaacagtgacataaaggaagagaagtgttgcaacaaactcagctataagag |
21793109 |
T |
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| Q |
450 |
ctctgtacaaagaccactttgttaactcatctacatcaaacaaaggtgctggtggtggatcttggtaatccttagctgaaaattcaccaccttgttcttg |
549 |
Q |
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|||| || || ||||||||||||| ||| || ||||| | ||| |||||||| ||||| ||||||||||| || ||||| ||| | ||||||||||| |
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| T |
21793108 |
ctctataaaatgaccactttgttagctcctcaacatctatcaatggtgctggaggtgggtcttggtaatcttttgctgagtatt---ctccttgttcttg |
21793012 |
T |
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| Q |
550 |
aacctcaacatcttt |
564 |
Q |
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| T |
21793011 |
aacctcaacatcttt |
21792997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 31460746 - 31460812
Alignment:
| Q |
255 |
taccagagataccggcggtgcagtaaacaaggatgaagatcataccaccaaaagcccaagcaattcc |
321 |
Q |
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| T |
31460746 |
taccagagataccagcggtacagtaaacaagagcaaagatcatgccaccaaaagaccaagcaattcc |
31460812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 403 - 465
Target Start/End: Original strand, 31460873 - 31460935
Alignment:
| Q |
403 |
agtgatgtataggaagagaagagttgctacaaactcagctatgacagctctgtacaaagacca |
465 |
Q |
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| T |
31460873 |
agtgatgtacaagaacagaaaagtggctacaaactcagctatcccagctctgtagaaagacca |
31460935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 321
Target Start/End: Original strand, 2650119 - 2650150
Alignment:
| Q |
290 |
aagatcataccaccaaaagcccaagcaattcc |
321 |
Q |
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| T |
2650119 |
aagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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