View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844-Insertion-3 (Length: 803)
Name: NF4844-Insertion-3
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 616; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 60 - 731
Target Start/End: Complemental strand, 39733509 - 39732840
Alignment:
| Q |
60 |
taattattttcagattttgatccaaaaatatatcttatcagggaaagagtaatgtacaagtggtagtttcaagtcaagtagaaaagatcaatgacgtaaa |
159 |
Q |
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| T |
39733509 |
taattattttcagattttgatccaaaaatatatcttatcagggaaagagtaatgtacaagtggtagtttcaagtcaagtagaaaagttcaatgacgtaaa |
39733410 |
T |
|
| Q |
160 |
atttgaatgagaagatggggaggtaggcacgtggaaagaaactaatttagcaagattctgagatttatatcaacatcaaaagcatttttccgcgaggtta |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
39733409 |
atttgaatgagaagatggggaggtaggcacgtggaaagaaactaatttagcaagattctgaaatttatatcaacaccaaaagcatttttccgcgaggtta |
39733310 |
T |
|
| Q |
260 |
aaacattattggttaatcagaaaacaacctaccgcaatcatgcagacttcttggagaaagtggcagtgcaacaagtataaaattctctttcaacaaatgc |
359 |
Q |
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| T |
39733309 |
aaacattattggttaatcagaaaacaacctaccacaatcatgcagacttcttggagaaag-ggcagtgcaacaagtataaaattctctttcaacaaatgc |
39733211 |
T |
|
| Q |
360 |
aacaaaaaatttacaacattctttgcttttaattccagcattgctcattttataacaacggtaaggaacaaactgaatactgaatagggtaccttttgtc |
459 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733210 |
aataaaaaatttacaacattctttgcttttaattccagcattgctcattttataacaacggtaaggaacaaactgaatactgaatagggtaccttttgtc |
39733111 |
T |
|
| Q |
460 |
acagagtcctcagcattgatttgattaactaatgacatgctaaactgtgcataaatactccaaccgttgggcaaattttctgaatctgcaacgccaaagt |
559 |
Q |
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| T |
39733110 |
acagagtcctcagcattgatttgattaactaaagacatggtaaactgtgcataaatactccaaccgttgggcaaattttctgaatctgcaacgccaaaat |
39733011 |
T |
|
| Q |
560 |
acatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcagataaaagaaaaaacattagaagggatcacagatgataaa |
659 |
Q |
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| T |
39733010 |
acatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcagataaaagaaaaaacattagaagggatcacagatgataaa |
39732911 |
T |
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| Q |
660 |
tacacacaggaactaaatgtaacaactacaacaaaatcacttcctccaatagatagaatctacatgggtcaa |
731 |
Q |
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| T |
39732910 |
tacacacaggaact-aatgtaacaactacaacaaaatcagttcctccaatagatagaatctacatggctcaa |
39732840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 442 - 716
Target Start/End: Original strand, 39867845 - 39868122
Alignment:
| Q |
442 |
aatagggtaccttttgtcacagagtcctcagcattgatttgattaactaatgacatgctaaactgtgcataaatactccaaccgttgggcaaattttctg |
541 |
Q |
| |
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|||||||||||| || ||||||||| || | ||||||||||||||||| || || |||||||||||||||| |||||||||| ||||||||||| ||| |
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| T |
39867845 |
aatagggtacctcttctcacagagtacttattattgatttgattaactactgtcaagctaaactgtgcataactactccaaccattgggcaaattagctg |
39867944 |
T |
|
| Q |
542 |
aatctgcaacgccaaagtacatggacaaatggtccatcgcattgtccccttctgggaaaataattacatgcctgatcag----ataaaagaaaaaacatt |
637 |
Q |
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| T |
39867945 |
aatcttgaacatccaaatacatggacaaatggtccgacacattgttcccttttgggaaaagaagtacacgcctgctccgagtaagaaaaaaaaaagaatt |
39868044 |
T |
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| Q |
638 |
agaagggatcacagatgataaatacacacaggaactaaatgtaacaactacaacaaaatcacttcctccaatagataga |
716 |
Q |
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| T |
39868045 |
agaagtgaacacttaagataaatacacataggaact-aatataacagctacaacaaaatgacttccgccactagataga |
39868122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 114 - 397
Target Start/End: Original strand, 39867553 - 39867840
Alignment:
| Q |
114 |
tacaagtggtagtttcaagtcaagtagaaaagatcaatgacgtaaaatttgaatgagaagatggggaggtaggcacgtggaaagaaactaatttagcaag |
213 |
Q |
| |
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|||||||||||| ||||||| |||||||||| | |||| ||||||||||||||||| | |||| | ||||||||||||| ||||||||| |
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| T |
39867553 |
tacaagtggtagcttcaagttcagtagaaaagtttaatggcgtaaaatttgaatgagca-----------aggcgcatggaaagaaactagtttagcaag |
39867641 |
T |
|
| Q |
214 |
attctgagatttatatcaacatca---aaagcatttttccgcgaggttaaaacattattggttaatcagaaaacaacctaccgcaatcatgcagacttct |
310 |
Q |
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| T |
39867642 |
gttctaaagtttatatcaacaacagcaaaagaattttcccacaaggtaaacaaattattggttaatcagaaaacaacccaccacaatcatgcaggcttct |
39867741 |
T |
|
| Q |
311 |
tggagaaagtggcagtgcaa-----------caagtataaaa-ttctctttcaacaaatgcaacaaaaaatttacaacattctttgcttttaattccag |
397 |
Q |
| |
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||| |||| | |||||| |||| |||||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||| |
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| T |
39867742 |
cagaggaagttgtggtgcaacttgaatttttcaagaataaaatttctctttcagtaaatgcaacaaacatcttacaacattctttgcttttaattccag |
39867840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 716
Target Start/End: Original strand, 39901566 - 39901618
Alignment:
| Q |
663 |
acacaggaactaaatgtaacaactacaacaaaatcacttcctccaatagataga |
716 |
Q |
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| T |
39901566 |
acacaggaactaaaa-taacaactacaacaaaatcacttcctacaatagataga |
39901618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 748 - 796
Target Start/End: Complemental strand, 39732791 - 39732744
Alignment:
| Q |
748 |
ataaacatcatgaatagattcggggaataacaatttatagcccccaaca |
796 |
Q |
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| T |
39732791 |
ataaacatcatgaatagattcgggggat-accatttatagcccccaaca |
39732744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 39733555 - 39733525
Alignment:
| Q |
10 |
actaacaataccaacattgacaatttaaatt |
40 |
Q |
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| T |
39733555 |
actaacaataccaacattgacaatttaaatt |
39733525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 621
Target Start/End: Original strand, 37476603 - 37476723
Alignment:
| Q |
498 |
gctaaactgtgcataaatactccaaccgttgggcaaattttctgaatctgcaacgccaaagtacatggacaaatggtccatcgcattgtccccttctggg |
597 |
Q |
| |
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||||||||||||||| |||||||||||| ||||| | | |||||||||||| | || ||||||||||||| ||||| | |||| ||||| ||| |
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| T |
37476603 |
gctaaactgtgcatatctactccaaccgtagggcagactagttgaatctgcaacatccaaatacatggacaaatagtcca---cgttgttcccttttgga |
37476699 |
T |
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| Q |
598 |
aaaataattacatgcctgatcaga |
621 |
Q |
| |
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||||||| |||| ||||| ||||| |
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| T |
37476700 |
aaaataagtacacgcctgttcaga |
37476723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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