View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844-Insertion-4 (Length: 781)
Name: NF4844-Insertion-4
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 679; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 26 - 781
Target Start/End: Original strand, 45973928 - 45974682
Alignment:
| Q |
26 |
tattttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcacaatccgaattttagttgataagaaagtact |
125 |
Q |
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| T |
45973928 |
tattttaatcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcacaatccgaattttagttgataagaaagtact |
45974027 |
T |
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| Q |
126 |
cttgtgttttctttcccaccaccaccaccattggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagtt |
225 |
Q |
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| T |
45974028 |
cttgtgttttctttcccaccaccaccaccactggcattgactattttgcaactctccaacccattacaagttaaatcaacagtgcacaatgtcacaagtt |
45974127 |
T |
|
| Q |
226 |
cacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacattt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974128 |
cacaaccaaccacattacatcaccatcacattcacgttttctctgtgtttttcagttaccagtacctccattattattagcactatagcatatcacattt |
45974227 |
T |
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| Q |
326 |
cctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattca |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974228 |
cctctttatcggaaaaccatatcccgctttaaacatcgcaactacgcgattatacttatcaatctgtcttctaagtttcttaagagtaaaatacaattca |
45974327 |
T |
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| Q |
426 |
gcttccaactatatattatgcataataattagttcaagtgctgttatttgattgttgcaataagagatttgcatgcgttgagnnnnnnnnnnnnnnnnnn |
525 |
Q |
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| T |
45974328 |
gcttccaactatatattatgcataataattagttgaagtgctgttatttgattgttgcaataagagatttgcatgcgttgaggaaagaagaagaagaaca |
45974427 |
T |
|
| Q |
526 |
ncagcgaagaggacggtgtcggtaacggccaagtttccgtttgtttcttggtttgctacgtggcagcaagaggctcgtgagtgaaaatgccacatagagc |
625 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45974428 |
gcaacgaagaggacggtgtcggtaacggccaagtttccgtttgtttcttggtttgctacgtggc-gcaagaggctcgtgagtgaaaatgccacatagagc |
45974526 |
T |
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| Q |
626 |
aacttactttttcccgcgtcaatttccggagcgaggattggatgaatcatccaaaaagctattagatcaagataaggacaaaatcgtcaactccatcaaa |
725 |
Q |
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| T |
45974527 |
aacttactttttcccgcgtcaatttccggagcgaggattggatgaatcatccaaaaagctattagatcaagataaggacaaaatcgtcaactccatcaaa |
45974626 |
T |
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| Q |
726 |
tctccaatcgaaaacgacactccaaccacaaagtcactttcctcgtctactcctcc |
781 |
Q |
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| T |
45974627 |
tctccaatcgaaaacgacactccaaccacaaagtcactttcctcgtctactcctcc |
45974682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 10946447 - 10946384
Alignment:
| Q |
33 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
96 |
Q |
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||||||||||| ||| | |||||| |||||||||| || |||||| ||| |||||||||||||| |
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| T |
10946447 |
atcagatggttttgtattgtttaactgtgtgactgcgtcattttaatgactgcagtgaatcaca |
10946384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 29175904 - 29175841
Alignment:
| Q |
33 |
atcagatggttatgtttcgtttaagtgtgtgactgtgttattttattgaatgcagtgaatcaca |
96 |
Q |
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| T |
29175904 |
atcagatggttatgttttgtttgaatgtgtgactgtgtcattttactgactgcagtgagtcaca |
29175841 |
T |
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