View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844-Insertion-5 (Length: 441)
Name: NF4844-Insertion-5
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 414
Target Start/End: Complemental strand, 48416882 - 48416476
Alignment:
| Q |
8 |
gttttttggttcttcgccatatcaggcaaaataagttgatctcttgcgtacacttaaagacgccaacaataaataagccaaaagaagacattaattgtat |
107 |
Q |
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| T |
48416882 |
gttttttggttcttcgccatatcaggcaaaataagttgatctcttgcgtacacttaaagacgccaacaataaataagccaaaagaagacattaattgtat |
48416783 |
T |
|
| Q |
108 |
gacagcacaacaaaagtaacctaagcaaggatcaacaaaggcaacatttaactcgatcgtgattcggtggtgtaataaagcaggcaattttcatattatt |
207 |
Q |
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| T |
48416782 |
gacagcacaacaaaagtaacctaagcaaggatcaacaaaggcaacatttaactcgatcgtgattcggtggtgtaataaagcacgcaattttcatattatt |
48416683 |
T |
|
| Q |
208 |
agatctcgatcattaattaaaattcgaacggttcaaattaatatagttataaaatctttctaaacggtctcaatcacatgttttagattggatggtcttg |
307 |
Q |
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| T |
48416682 |
agatctcgatcattaattaaaattcgaccggttcaaattaatatagttataaaatctttctaaacgatctcaatcacatgttttagattggatggtcttg |
48416583 |
T |
|
| Q |
308 |
atttgttacgtgttacaacatctcatctatctatgatgttaataattatgactttactttatgggattcaacacctttgtttattttgacagattgaata |
407 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | || |
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| T |
48416582 |
atttgttacgtgttacaacatcccatctatctatggtgttaataattatggctttactttatgggattcaacaccttcgtttattttgacagattaatta |
48416483 |
T |
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| Q |
408 |
aaaattg |
414 |
Q |
| |
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| T |
48416482 |
aaaattg |
48416476 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 316
Target Start/End: Complemental strand, 35003536 - 35003430
Alignment:
| Q |
210 |
atctcgatcattaattaaaattcgaacggttcaaattaatatagttataaaatctttctaaacggtctcaatcacatgttttagattggatggtcttgat |
309 |
Q |
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||||||| ||||||||||| | ||| ||||||||| ||| | |||||||||| ||| || | |||||| |||||||||||||| ||||| || |||| |
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| T |
35003536 |
atctcgaccattaattaaagattgaatggttcaaatcaatgcaattataaaatcattcaaaccaatctcaaccacatgttttagatcggatgatcctgat |
35003437 |
T |
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| Q |
310 |
ttgttac |
316 |
Q |
| |
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| T |
35003436 |
ttgttac |
35003430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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