View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4844-Insertion-6 (Length: 213)

Name: NF4844-Insertion-6
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4844-Insertion-6
NF4844-Insertion-6
[»] chr2 (7 HSPs)
chr2 (8-213)||(2326051-2326256)
chr2 (10-213)||(2329768-2329971)
chr2 (8-213)||(2320197-2320402)
chr2 (8-213)||(2292877-2293082)
chr2 (8-213)||(2302496-2302701)
chr2 (8-213)||(2309208-2309413)
chr2 (10-213)||(2350068-2350271)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 2326051 - 2326256
Alignment:
Q  8 acaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2326051 acaaccaccgtacccctccctcccagcccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctca 2326150  T
Q  108 aaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2326151 aaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgt 2326250  T
Q  208 tcaaaa 213  Q
    ||||||    
T  2326251 tcaaaa 2326256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 2329768 - 2329971
Alignment:
Q  10 aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa 109  Q
    |||||||| | ||||||| ||  | |||||||| || || ||||||| |||||| |||||||| |||||||||||  |||| |||||||||||||||| |    
T  2329768 aaccaccgcaaccctcccccctggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcaga 2329867  T
Q  110 actctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttc 209  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  2329868 actcttcatgccaaacatggtcctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttc 2329967  T
Q  210 aaaa 213  Q
    ||||    
T  2329968 aaaa 2329971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 2320197 - 2320402
Alignment:
Q  8 acaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctca 107  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||    
T  2320197 acaaccaccgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctca 2320296  T
Q  108 aaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgt 207  Q
    ||||||||||||||||||||||||||||||||| | |  ||||||| ||  |||||||||||| ||||  ||||| ||||||||| ||||| | ||||||    
T  2320297 aaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgt 2320396  T
Q  208 tcaaaa 213  Q
    ||||||    
T  2320397 tcaaaa 2320402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 2292877 - 2293082
Alignment:
Q  8 acaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctca 107  Q
    ||||||||| |||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||    
T  2292877 acaaccaccatacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctca 2292976  T
Q  108 aaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgt 207  Q
    ||||||||||||||||||||||||||||||||| | |  ||||||| ||  |||||||||||| |||   ||||| | ||||||||||||| | ||||||    
T  2292977 aaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgt 2293076  T
Q  208 tcaaaa 213  Q
    ||||||    
T  2293077 tcaaaa 2293082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 2302496 - 2302701
Alignment:
Q  8 acaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctca 107  Q
    ||||||||||||||| |||||||  |||| ||||||||||||||| ||| || ||| || | |||||||||| |||  ||||||||||||||||||||||    
T  2302496 acaaccaccgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaacttgaaccttttctca 2302595  T
Q  108 aaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgt 207  Q
    ||||||||||||||||||||||||||||||||| |||  | ||||| ||  |||||||||||| ||||   |||| ||||||||||||||| | ||||||    
T  2302596 aaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttcatcgatgaccatgctctggcccaccatgttctcgt 2302695  T
Q  208 tcaaaa 213  Q
    ||||||    
T  2302696 tcaaaa 2302701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 2309208 - 2309413
Alignment:
Q  8 acaaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctca 107  Q
    |||||||| ||||||||||||||| |||| | ||||||||||||||||| || | | |||| ||||| ||||||| | ||||||||||||||||||||||    
T  2309208 acaaccactgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctca 2309307  T
Q  108 aaactctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgt 207  Q
    ||||||||||||||||||||||||||||||||| | |  ||||||| ||   ||||||||||| ||||  ||||| ||||||||| ||||| | ||||||    
T  2309308 aaactctccatgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgt 2309407  T
Q  208 tcaaaa 213  Q
    ||||||    
T  2309408 tcaaaa 2309413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 2350068 - 2350271
Alignment:
Q  10 aaccaccgtacccctccctcccagcccaccacacatccccatcatcataagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaa 109  Q
    |||||||| | ||||||||||| | ||||| || |||||||| |||| ||| || | |||||||||||||||||  |||||||| ||||||||| |||||    
T  2350068 aaccaccgcaaccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaa 2350167  T
Q  110 actctccatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttc 209  Q
    || |||||  ||||| ||||||||||||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  2350168 accctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttc 2350267  T
Q  210 aaaa 213  Q
    ||||    
T  2350268 aaaa 2350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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