View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844-Insertion-7 (Length: 153)
Name: NF4844-Insertion-7
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844-Insertion-7 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 127; Significance: 6e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 6e-66
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 42046167 - 42046024
Alignment:
| Q |
8 |
caaagaagcttacttattcaaaggagaccaatatgctcgtatagactatatggaatcaaccgtcttgtttcgagtatcaagagcattaaaggtttttcat |
107 |
Q |
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| T |
42046167 |
caaagaagcttacttatttaaaggagaccaatatgctcgtatagactat--ggaatcaaccgtcttgtttcgagtatcaagagcattaaaggtttttcat |
42046070 |
T |
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| Q |
108 |
ctttttgtggcacaatctttgaaaatgggtcatttgatgcagcttt |
153 |
Q |
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| T |
42046069 |
ctttctgtggcacaatctttgaaaatgggtcatttgatgcagcttt |
42046024 |
T |
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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 3352427 - 3352512
Alignment:
| Q |
8 |
caaagaagcttacttattcaaaggagaccaatatgctcgtatagactatatggaatcaaccgtcttgtttcgagtatcaagagcatta |
95 |
Q |
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| T |
3352427 |
caaataagtttacttattcaaaggagacaagtatgctcgtataga--ttatggaaccaaccgtctggttcaaagtatcaagaacatta |
3352512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 42471355 - 42471310
Alignment:
| Q |
7 |
acaaagaagcttacttattcaaaggagaccaatatgctcgtataga |
52 |
Q |
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| T |
42471355 |
acaaagaagcttacttattcaaaggagacaagtatgctcgtataga |
42471310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 14452708 - 14452756
Alignment:
| Q |
8 |
caaagaagcttacttattcaaaggagaccaatatgctcgtatagactat |
56 |
Q |
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| T |
14452708 |
caaagaagttcacttattcaaaggagacaagtatgctcgtatagactat |
14452756 |
T |
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