View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844-Insertion-9 (Length: 475)
Name: NF4844-Insertion-9
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844-Insertion-9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 233 - 475
Target Start/End: Original strand, 8841847 - 8842090
Alignment:
| Q |
233 |
atatatatgttacagtatgaatgtgtacacatttacatgttgaaatgatgcttcatgattctgttactgttagaagaagttggtttcatgaaaatttctt |
332 |
Q |
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| T |
8841847 |
atatatatgttacagtatgaatgtgtacacatttacatgttgaaatgatgcttcatggttctgttactgttagaagaagttggtctcatgaaaatttctt |
8841946 |
T |
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| Q |
333 |
atcgttaagcgttcggttttgtttgtaagcaggatataattcactttagtgtttctgccaagggcctctcttgagcctgtgtaattttttcatacttttg |
432 |
Q |
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| T |
8841947 |
atcgttaagcgttcggttttgtttgtaagcaggatataattcactttagtgtttctgccaagggcctctcttgagcctgtgtaattttttcatacttttg |
8842046 |
T |
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| Q |
433 |
atcaatgtaatgtaattttttccttgactc-agtactgtttttg |
475 |
Q |
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| T |
8842047 |
atcaatgtaatgtaatttttcccttgactcaagtactgtttttg |
8842090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 8841619 - 8841819
Alignment:
| Q |
8 |
aatttagattctggaaggcaggtagagaagtatataaagtatcaacctgaggatatagagact-acattgatgagttatttgatggaaagcctcatcatt |
106 |
Q |
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| T |
8841619 |
aatttagattctggaaggcaggtagagaagtatataaagtatcaacctgaggatatagagacttacattgatgagttatttgatggaaagcctcatcatt |
8841718 |
T |
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| Q |
107 |
ctattggaagaaggcgataataacttcaactaatcaacattcagttacacctcaccaatggttgcatatgatccatacaccagtacatatcatataatca |
206 |
Q |
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| T |
8841719 |
ctattggaagaaggcgataataacttcaactaatcaacattcagttacacctcaccaatggttgtatatgatccatacaccagtacatatcatataatca |
8841818 |
T |
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| Q |
207 |
g |
207 |
Q |
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| T |
8841819 |
g |
8841819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 10625244 - 10625182
Alignment:
| Q |
31 |
agagaagtatataaagtatcaacctgaggatatagagac-tacattgatgagttatttgatgg |
92 |
Q |
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| T |
10625244 |
agagaagtatattaagtttcaagctgaagatatagagacttacattgatgagttatttgatgg |
10625182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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