View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844_high_6 (Length: 278)
Name: NF4844_high_6
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 41309306 - 41309473
Alignment:
| Q |
2 |
tatattagatctaa--tagacatgtataatcacacgatcatatttttgaaaaatagatcaacataatattaaaaaattaataaggtatttggcggatcat |
99 |
Q |
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| T |
41309306 |
tatattagatctaaaatagacatgcataatctcacggttgcatttttgaaaaatagatcaacataatattaaaaaattaataaggtatttggtggatcat |
41309405 |
T |
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| Q |
100 |
ctacactgttgacacaccttagacattgagattgaaagttaatggaaaatgattaatttgactcatcg |
167 |
Q |
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| T |
41309406 |
ctacacttttgacacaccttagacattgaggttgaaagttaatggaaaatgattaattagactcatcg |
41309473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 41309538 - 41309575
Alignment:
| Q |
232 |
gttaagagaccaaatatacctacaaatcgtagaattat |
269 |
Q |
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| T |
41309538 |
gttaagagaccaaatatacctacaaatcgcagaattat |
41309575 |
T |
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