View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4844_low_1 (Length: 504)

Name: NF4844_low_1
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4844_low_1
NF4844_low_1
[»] chr5 (9 HSPs)
chr5 (89-386)||(24913749-24914046)
chr5 (77-206)||(24989751-24989880)
chr5 (89-206)||(24913506-24913623)
chr5 (399-488)||(24989470-24989560)
chr5 (399-487)||(24913208-24913297)
chr5 (304-385)||(24989667-24989748)
chr5 (304-385)||(24913422-24913503)
chr5 (11-61)||(24914118-24914168)
chr5 (11-61)||(24989941-24989991)
[»] scaffold0099 (2 HSPs)
scaffold0099 (77-148)||(26157-26231)
scaffold0099 (399-464)||(25812-25881)
[»] chr7 (1 HSPs)
chr7 (159-195)||(22601548-22601584)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 89 - 386
Target Start/End: Complemental strand, 24914046 - 24913749
Alignment:
Q  89 aataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaagtttgcagcata 188  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||  ||    
T  24914046 aataattttagacgcctccacaacagtactataactgcaattgcgaccgcatcaaccccattttcctgcgttttaccacaatataaaagtttgcagtgta 24913947  T
Q  189 accgcaaatgtgacaacatattgcgaccatagaagaaaagagagaacttgccttaaattttggttgtgattgaacttgaatattttgggaggcttcaata 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24913946 accgcaaatgtgacaacatattgcgaccatagaagaaaagagagaacttgccttaaattttggttgtgattgaacttgaatattttgggaggcttcaata 24913847  T
Q  289 tttctgaggtgtctagagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgattg 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  24913846 tttctgaggtgtctagagtatgcaagaagctgagccttacggttacaaccacgtcttgtttttgattcacattgtgacttgattttctttgatgattg 24913749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 77 - 206
Target Start/End: Complemental strand, 24989880 - 24989751
Alignment:
Q  77 ttgcaatatagcaataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaa 176  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||| ||  ||||||||||||||||||    
T  24989880 ttgcagtatagtaataattttagacgcctccacaataacactataactgcaattgcagccgcatcaaccacatttgcctgctttttaccacaatataaaa 24989781  T
Q  177 gtttgcagcataaccgcaaatgtgacaaca 206  Q
    |||||||||||||| ||||||| |||||||    
T  24989780 gtttgcagcataactgcaaatgcgacaaca 24989751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 89 - 206
Target Start/End: Complemental strand, 24913623 - 24913506
Alignment:
Q  89 aataattttagacgcctccacaacaacactataactgcaattgcgaccgcatcaaccacatttgcatgtgttttaccacaatataaaagtttgcagcata 188  Q
    ||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  24913623 aataattttagacgcctccacaacaactctataactgcaattgcagccgcatcaaccacatttgcctgctttttaccacaatataaaagtttgcagcata 24913524  T
Q  189 accgcaaatgtgacaaca 206  Q
    || ||||||| |||||||    
T  24913523 actgcaaatgcgacaaca 24913506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 399 - 488
Target Start/End: Complemental strand, 24989560 - 24989470
Alignment:
Q  399 ttccacaattgatcgttaaaattttgagaaatt-taatttttgaaggaagaacagatcaaagattttatttccattaaattaattgtttct 488  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||||    
T  24989560 ttccacaattgatcgttaaacttttgagaaattgtaaattttgaaggaagaatagatcagagattttatttacattaaattaattgtttct 24989470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 399 - 487
Target Start/End: Complemental strand, 24913297 - 24913208
Alignment:
Q  399 ttccacaattgatcgttaaaattttgagaaatt-taatttttgaaggaagaacagatcaaagattttatttccattaaattaattgtttc 487  Q
    |||||||||||||||||||| |||||||||||| ||| |||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  24913297 ttccacaattgatcgttaaacttttgagaaattgtaaattttgaaggaagaatagatcagagattttatttacattaaattaattgtttc 24913208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 24989748 - 24989667
Alignment:
Q  304 gagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgatt 385  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  24989748 gagtatgcaagaagttgagccttacgatcacagccacgtcttgtttttgattcatattgtggcttggttttctttgatgatt 24989667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 24913503 - 24913422
Alignment:
Q  304 gagtatgcaagaagctgagccttacggtcacaaccacgtcttgtttttgattcacattgtggcttgattttctttggtgatt 385  Q
    |||||||||||||| ||| ||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  24913503 gagtatgcaagaagttgaaccttacgatcacagccacgtcttgtttttgattcatattgtggcttggttttctttgatgatt 24913422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 24914168 - 24914118
Alignment:
Q  11 ttattctaaccggtttcacaaaccataaacgcttctgtaaaaatttcacaa 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24914168 ttattctaaccggtttcacaaaccataaacgcttctgtaaaaatttcacaa 24914118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 24989991 - 24989941
Alignment:
Q  11 ttattctaaccggtttcacaaaccataaacgcttctgtaaaaatttcacaa 61  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  24989991 ttattccaaccggtttcacaaaccataaacgcttatgtaaaaatttcacaa 24989941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 26231 - 26157
Alignment:
Q  77 ttgcaatatagcaataatttt-aga-cgcctccacaacaacactataactgcaattgc-gaccgcatcaaccaca 148  Q
    ||||| ||||| ||||||||| ||| ||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  26231 ttgcagtatagtaataatttttagaacgcctccacaataacactataactgcaattgcagcccgcatcaaccaca 26157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 464
Target Start/End: Complemental strand, 25881 - 25812
Alignment:
Q  399 ttccacaattgatcgttaaaatttt-gagaaattt---aatttttgaaggaagaacagatcaaagatttt 464  Q
    |||||||||||||||||||| |||| |||||| ||   ||||||||||||||||| |||||| |||||||    
T  25881 ttccacaattgatcgttaaactttttgagaaaattgtaaatttttgaaggaagaatagatcagagatttt 25812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 22601548 - 22601584
Alignment:
Q  159 ttttaccacaatataaaagtttgcagcataaccgcaa 195  Q
    |||||| |||||||||| |||||||||||||||||||    
T  22601548 ttttactacaatataaaggtttgcagcataaccgcaa 22601584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University