View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844_low_2 (Length: 484)
Name: NF4844_low_2
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 16842774 - 16843234
Alignment:
| Q |
8 |
gagatgaagctgaacaagcacattgtttgtacaaggatcgatatttatagtgttatgggacgcttcaaagatgcagagatgttacatctaaagttgaaga |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16842774 |
gagaagaagctgaacaagcacattgtttgtacaaggatcgatatttatagtgttatgggacgcttcaaagatgcagagatgttacatctaaagttgaaga |
16842873 |
T |
|
| Q |
108 |
tgtcttcttcaccaaattcgttggatgtgattgcatatagcattgttgtgcggaggttgtattttatgcctaagaaacaaggcttggttgatgtcattac |
207 |
Q |
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| T |
16842874 |
tgtcttcttcaccaaattcgttggatgtgattgcatatagcattgttgtgcggaggttgtattttatgcctaagaaacaaggcttggttgatgtcattac |
16842973 |
T |
|
| Q |
208 |
ctacaatactattatagatgcttatgggaaaaggaaggacttcagcgacatgtcaagaactgttcacaagatgcaatttgatgtattctcagtttccctt |
307 |
Q |
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| T |
16842974 |
ctacaatactattatagatgcttatgggaaaaggaaggacttcagcgacatgtcaagaactgttcacaagatgcaatttgatgtattctcagtttccctt |
16843073 |
T |
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| Q |
308 |
gaagcctacaattcaatgctggatgcttatggaaaagatagccaaatggacgcgtttagatctgtactgaaaatgatgaaggaatcaaattatgcttctg |
407 |
Q |
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| T |
16843074 |
gaagcctacaattcaatgctggatgcttatggaaaagatagccaaatggacgcgtttagatctgtactgaaaatgatgaaggaatcaaattatgcttctg |
16843173 |
T |
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| Q |
408 |
atctctacacgtacaacaccgtgatcaatatctacagtgaacaaagttggatcgaagaagt |
468 |
Q |
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| T |
16843174 |
atctctacacgtacaacaccgtgatcaatatctacagtgaacaaagttggatcgaagaagt |
16843234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 159 - 468
Target Start/End: Original strand, 24210191 - 24210500
Alignment:
| Q |
159 |
ggaggttgtattttatgcctaagaaacaaggcttggttgatgtcattacctacaatactattatagatgcttatgggaaaaggaaggacttcagcgacat |
258 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| |||| |
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| T |
24210191 |
ggaggttgtattttatggctaagaaacaaggcttggttgatgtcatcacctacaatactattatagattcttatgggaaaaagaaggacttcagaaacat |
24210290 |
T |
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| Q |
259 |
gtcaagaactgttcacaagatgcaatttgatgtattctcagtttcccttgaagcctacaattcaatgctggatgcttatggaaaagatagccaaatggac |
358 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24210291 |
gtcaagaactgttcgcaagatgcaatttgatggattctcagtttcccttgaagcctacaattcaatgctggatgcttacggaaaagatagccaaatggac |
24210390 |
T |
|
| Q |
359 |
gcgtttagatctgtactgaaaatgatgaaggaatcaaattatgcttctgatctctacacgtacaacaccgtgatcaatatctacagtgaacaaagttgga |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
24210391 |
gcgtttagatctgtactgaaaatgatgaaggaatcaaattgtgcttctgatctctacacgtacaacattgtgatcaatatctatggtgaacaaggttgga |
24210490 |
T |
|
| Q |
459 |
tcgaagaagt |
468 |
Q |
| |
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|||||||||| |
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| T |
24210491 |
tcgaagaagt |
24210500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 24209686 - 24209839
Alignment:
| Q |
8 |
gagatgaagctgaacaagcacattgtttgtacaaggatcgatatttatagtgttatgggacgcttcaaagatgcagagatgttacatctaaagttgaaga |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
24209686 |
gagaagaagctgaacaagcacattgtttgtacaatgatcgatatttatagtgtcatgggatgcttcaaagatgcagagatgttgtatctaaagttgaaga |
24209785 |
T |
|
| Q |
108 |
tgtcttcttcaccaaattcgttggatgtgattgcatatagcattgttgtgcgga |
161 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24209786 |
agtcttcttcaccaaattcgttggatatgattgcatatagcattgttgtgcgga |
24209839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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