View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844_low_3 (Length: 355)
Name: NF4844_low_3
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 37135874 - 37136201
Alignment:
| Q |
20 |
ccttccatataatatgtgctctcagtaaagtctccaactcttgttacatggttctgacaaatgttgtgtgttcattagatagcagaaacacgggctattc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135874 |
ccttccatataatatgtgctctcagtaaagtctccaactcttgttacatggttctgacaaatgttgtgtgttcattagatagcagaaacacgggctattc |
37135973 |
T |
|
| Q |
120 |
cattagaagtgaaagtagaaagtttaggaaatttaccttcctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37135974 |
cattagaagtgaaagtagaaagtttaggaaatttaccttcctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataatt |
37136073 |
T |
|
| Q |
220 |
tctccgtggttcatatccctctcaagaattgggcttataatcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaacag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37136074 |
tctccgtggttcatatccctctcaagaattgggcttataatcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaacag |
37136173 |
T |
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| Q |
320 |
gttctgcaaattcacaccacttcttctc |
347 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
37136174 |
gttctgcaaattcacaccacttcttctc |
37136201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 37139813 - 37140140
Alignment:
| Q |
20 |
ccttccatataatatgtgctctcagtaaagtctccaactcttgttacatggttctgacaaatgttgtgtgttcatt-agatagcagaaacacgggctatt |
118 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||| || ||||||||| ||||||||||||||||||| ||||||| |||| ||||| |||| |
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| T |
37139813 |
ccttccatataatatgtgctctcattgaagtctccaactcttggtatatggttctgtcaaatgttgtgtgttcatttagatagctgaaagacggg-tatt |
37139911 |
T |
|
| Q |
119 |
ccattagaagtgaaagtagaaagtttaggaaatttaccttcctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataat |
218 |
Q |
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|||||||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
37139912 |
ccattagaagaggaggtagaaagtttaggaaatttaccttcctgtgtattccaattatattgccgtgattcccaattacgacggcagtgttccacataac |
37140011 |
T |
|
| Q |
219 |
ttctccgtggttcatatccctctcaagaattgggcttataatcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaaca |
318 |
Q |
| |
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||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||| || || || |
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| T |
37140012 |
ctctccatggttcacatccctttcaagaattgggcttataatcaccatgttatacttctttgcaaagctttgcaaaaattttgttgattctccatcggca |
37140111 |
T |
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| Q |
319 |
ggttctgcaaattcacaccacttcttctc |
347 |
Q |
| |
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|||||||||||||||||||| || ||||| |
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| T |
37140112 |
ggttctgcaaattcacaccattttttctc |
37140140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 12077315 - 12077641
Alignment:
| Q |
20 |
ccttccatataatatgtgctctcagtaaagtctccaactcttgttacatggttctgacaaatgttgtgtgttcattagatagcagaaacacgggctattc |
119 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||||||||| |||||| || || | |||| |||| || ||||||| |||| |||| |||||| |
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| T |
12077315 |
ccttccatataatatgtactctcagtgaagtctctgactcttgttagatggttgtgcaaatttttgtatgtttatcagatagctgaaagacggtctattc |
12077414 |
T |
|
| Q |
120 |
cattagaagtgaaagtagaaagtttaggaaatttaccttcctgtgtatgccaattatattgccgtgattcccaattacaacggcagtgttccaaataatt |
219 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
12077415 |
cattagaagtggaagtagaaagtttagagaatttaccttcctgtgtatcccaattatattgtcgtgattcccaatcacaacggcagtgttccaaataacc |
12077514 |
T |
|
| Q |
220 |
tctccgtggttcatatccctctcaagaattgggcttataatcaccatgttatacttcagtgcaaagcttcgcaaaaattcagttgattccccgtcaacag |
319 |
Q |
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||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |
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| T |
12077515 |
tcttcgtggttcatatccctctcaagaaatgggcttataatcaccatgttatacttcagtgcaaaaattcgcaaaaattcagttgattccctgt-aacag |
12077613 |
T |
|
| Q |
320 |
gttctgcaaattcacaccacttcttctc |
347 |
Q |
| |
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||||| ||||||||||||| |||||||| |
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| T |
12077614 |
gttctacaaattcacaccatttcttctc |
12077641 |
T |
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