View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4844_low_4 (Length: 350)
Name: NF4844_low_4
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4844_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 16842774 - 16842425
Alignment:
| Q |
1 |
cgtcagcatcacttttcatcatctggttatatattccaacagcatcctcgagcaaacctgcctctttacaagaacaaatcatctaccaacttattcttca |
100 |
Q |
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| T |
16842774 |
cgtcagcatcacttttcatcatctggttatatattccaacagcatcctcgagcaaacctgcctctttacaagaacaaatcatctaccaacttattcttca |
16842675 |
T |
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| Q |
101 |
cataagccataaccacagtggaacaacaactccgattaaccaaaatatacagataaaacaaacctttaagaaaacacggcaactcataaactttcccagc |
200 |
Q |
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| T |
16842674 |
cataagccataaccacagtggaacaacaactccgattaaccaaaatatacagataaaacaaacctttaagaaaacacggcaactcataaactttcccagc |
16842575 |
T |
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| Q |
201 |
cctctcaaacactcacaagagtaccaattatcgaagaataatgacatccacatctcaccatatcatcaagtaaaccaaccaaaccatccaaatcatcctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16842574 |
cctctcaaacactcacaagagtaccaattatcgaagaataatgacatccacatctcaccatatcatcaagtaaaccaaccaaaccatccaaatcatcctc |
16842475 |
T |
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| Q |
301 |
actcgcttgcaacttaatcatcgtaaacaaattagacgaactctgcttaa |
350 |
Q |
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| T |
16842474 |
actcgcttgcaacttaatcatcgtaaacaaattagacgaactctgcttaa |
16842425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 78 - 342
Target Start/End: Complemental strand, 24209538 - 24209272
Alignment:
| Q |
78 |
atcatctaccaacttattcttcacataagccataaccacagtggaacaacaactccgattaaccaaaatatacagataaaacaaacctttaagaaaacac |
177 |
Q |
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| T |
24209538 |
atcatccaccaacttattcttcacataagccataaccacagtggaacaacagctctgattaaccaaaatataccgataaaacgaacctttaagcaaacgc |
24209439 |
T |
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| Q |
178 |
ggcaactcataaactttcccagccctctca--aacactcacaagagtaccaattatcgaagaataatgacatccacatctcaccatatcatcaagtaaac |
275 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24209438 |
ggcaactcataaactttcccagccctctcataaacactcacaagagtaccaattatcgaagaataatgacatccacatctcaccatatcatcaagtgtac |
24209339 |
T |
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| Q |
276 |
caaccaaaccatccaaatcatcctcactcgcttgcaacttaatcatcgtaaacaaattagacgaact |
342 |
Q |
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| T |
24209338 |
caaccacaccatccaaatcatcctcattcgcttgcaacttaatcattgtaaacaaattagacgaact |
24209272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24209686 - 24209606
Alignment:
| Q |
1 |
cgtcagcatcacttttcatcatctggttatatattccaacagcatcctcgagcaaacctgcctctttacaagaacaaatca |
81 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24209686 |
cgtcagcattacttttcatcatctggttatatattccaacagcatcctcaagcaaacctgcctctttacaagaacaaatca |
24209606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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