View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4844_low_5 (Length: 324)

Name: NF4844_low_5
Description: NF4844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4844_low_5
NF4844_low_5
[»] chr1 (1 HSPs)
chr1 (10-308)||(27026323-27026621)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 27026621 - 27026323
Alignment:
Q  10 ataatactgcatgttatgtatatttattggattataatttgagagattagatatatgttaaatgttattttctgtgtactgaattttgattgaagttctg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27026621 ataatactgcatgttatgtatatttattggattataatttgagagattagatatatgttaaatgttattttctgtgtactgaattttgattgaagttctg 27026522  T
Q  110 atcttgaaaatttacatccctgttccttacttccttttaagaaacttttttaatgatattaaaatatttgtatccaagtaacaagtccatttaggtccat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27026521 atcttgaaaatttacatccctgttccttacttccttttaagaaacttttttaatgatattaaaatatttgtatccaagtaacaagtccatttaggtccat 27026422  T
Q  210 gttctctacacaactttggttatgtttcattattannnnnnnggatagacatattttaccaagttagaagttatattagtgcttatgcatcaattaagt 308  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27026421 gttctctacacaactttggttatgtttcattattatttttttggatagacatattttaccaagttagaagttatattagtgcttatgcatcaattaagt 27026323  T

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